Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D11
         (885 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   337   1e-92
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   336   2e-92
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   336   2e-92
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   310   1e-84
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   310   1e-84
AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD...   216   3e-56
AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC...   183   3e-46
AY071423-1|AAL49045.1|  330|Drosophila melanogaster RE50471p pro...    29   8.5  
AY069272-1|AAL39417.1|  331|Drosophila melanogaster GM09977p pro...    29   8.5  
AE014296-1353|AAF50499.1|  331|Drosophila melanogaster CG8209-PA...    29   8.5  

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  337 bits (828), Expect = 1e-92
 Identities = 149/207 (71%), Positives = 171/207 (82%)
 Frame = +1

Query: 70  SSMSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVX 249
           + MSHR FSAPRHGS+   PKKRS RHRG VKAFPK   SKPVHL  FIGYKAGM H+V 
Sbjct: 10  TDMSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVR 69

Query: 250 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 429
           E DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRF
Sbjct: 70  EADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRF 129

Query: 430 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 609
           YKNWY             W D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKA
Sbjct: 130 YKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKA 189

Query: 610 HIMEIQLNGGTIEDKVKWTREHLEKPI 690
           H+MEIQLNGG+IEDKVKW REHLEKPI
Sbjct: 190 HVMEIQLNGGSIEDKVKWAREHLEKPI 216



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 42/64 (65%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*K-HKGLRKVACIGXWHLLRVSFT 871
           V +VF QDEMIDC+GVTKGKG+K    S  H +  P K HKGLRKVACIG WH  RVS T
Sbjct: 218 VSNVFGQDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTT 276

Query: 872 VTRA 883
           V RA
Sbjct: 277 VARA 280


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  336 bits (827), Expect = 2e-92
 Identities = 149/205 (72%), Positives = 170/205 (82%)
 Frame = +1

Query: 76  MSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEP 255
           MSHR FSAPRHGS+   PKKRS RHRG VKAFPK   SKPVHL  FIGYKAGM H+V E 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 256 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 435
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 436 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 615
           NWY             W D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+
Sbjct: 121 NWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 180

Query: 616 MEIQLNGGTIEDKVKWTREHLEKPI 690
           MEIQLNGG+IEDKVKW REHLEKPI
Sbjct: 181 MEIQLNGGSIEDKVKWAREHLEKPI 205



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 42/64 (65%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*K-HKGLRKVACIGXWHLLRVSFT 871
           V +VF QDEMIDC+GVTKGKG+K    S  H +  P K HKGLRKVACIG WH  RVS T
Sbjct: 207 VSNVFGQDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTT 265

Query: 872 VTRA 883
           V RA
Sbjct: 266 VARA 269


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  336 bits (827), Expect = 2e-92
 Identities = 149/205 (72%), Positives = 170/205 (82%)
 Frame = +1

Query: 76  MSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEP 255
           MSHR FSAPRHGS+   PKKRS RHRG VKAFPK   SKPVHL  FIGYKAGM H+V E 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 256 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 435
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 436 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 615
           NWY             W D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+
Sbjct: 121 NWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHV 180

Query: 616 MEIQLNGGTIEDKVKWTREHLEKPI 690
           MEIQLNGG+IEDKVKW REHLEKPI
Sbjct: 181 MEIQLNGGSIEDKVKWAREHLEKPI 205



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 42/64 (65%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*K-HKGLRKVACIGXWHLLRVSFT 871
           V +VF QDEMIDC+GVTKGKG+K    S  H +  P K HKGLRKVACIG WH  RVS T
Sbjct: 207 VSNVFGQDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTT 265

Query: 872 VTRA 883
           V RA
Sbjct: 266 VARA 269


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  310 bits (762), Expect = 1e-84
 Identities = 137/188 (72%), Positives = 157/188 (83%)
 Frame = +1

Query: 127 PKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEPDRPGSKINKKEIVEAVT 306
           PKKRS RHRG VKAFPK   SKPVHL  FIGYKAGM H+V E DRPGSKINKKE+VEAVT
Sbjct: 5   PKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVT 64

Query: 307 IIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW 486
           ++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY             W
Sbjct: 65  VLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKW 124

Query: 487 QDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWT 666
            D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKW 
Sbjct: 125 TDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWA 184

Query: 667 REHLEKPI 690
           REHLEKPI
Sbjct: 185 REHLEKPI 192



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 42/64 (65%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*K-HKGLRKVACIGXWHLLRVSFT 871
           V +VF QDEMIDC+GVTKGKG+K    S  H +  P K HKGLRKVACIG WH  RVS T
Sbjct: 194 VSNVFGQDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTT 252

Query: 872 VTRA 883
           V RA
Sbjct: 253 VARA 256


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  310 bits (762), Expect = 1e-84
 Identities = 137/188 (72%), Positives = 157/188 (83%)
 Frame = +1

Query: 127 PKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEPDRPGSKINKKEIVEAVT 306
           PKKRS RHRG VKAFPK   SKPVHL  FIGYKAGM H+V E DRPGSKINKKE+VEAVT
Sbjct: 5   PKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVT 64

Query: 307 IIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW 486
           ++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY             W
Sbjct: 65  VLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKW 124

Query: 487 QDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWT 666
            D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKAH+MEIQLNGG+IEDKVKW 
Sbjct: 125 TDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWA 184

Query: 667 REHLEKPI 690
           REHLEKPI
Sbjct: 185 REHLEKPI 192



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 42/64 (65%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +2

Query: 695 VDSVFXQDEMIDCIGVTKGKGYKRCHFSLAHKETTP*K-HKGLRKVACIGXWHLLRVSFT 871
           V +VF QDEMIDC+GVTKGKG+K    S  H +  P K HKGLRKVACIG WH  RVS T
Sbjct: 194 VSNVFGQDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTT 252

Query: 872 VTRA 883
           V RA
Sbjct: 253 VARA 256


>AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD,
           isoform D protein.
          Length = 161

 Score =  216 bits (528), Expect = 3e-56
 Identities = 95/123 (77%), Positives = 105/123 (85%)
 Frame = +1

Query: 76  MSHRNFSAPRHGSLGXSPKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEP 255
           MSHR FSAPRHGS+   PKKRS RHRG VKAFPK   SKPVHL  FIGYKAGM H+V E 
Sbjct: 1   MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREA 60

Query: 256 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 435
           DRPGSKINKKE+VEAVT++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYK
Sbjct: 61  DRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYK 120

Query: 436 NWY 444
           NWY
Sbjct: 121 NWY 123


>AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC,
           isoform C protein.
          Length = 125

 Score =  183 bits (445), Expect = 3e-46
 Identities = 81/104 (77%), Positives = 90/104 (86%)
 Frame = +1

Query: 127 PKKRSRRHRGXVKAFPKAAPSKPVHLXAFIGYKAGMXHVVXEPDRPGSKINKKEIVEAVT 306
           PKKRS RHRG VKAFPK   SKPVHL  FIGYKAGM H+V E DRPGSKINKKE+VEAVT
Sbjct: 5   PKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVT 64

Query: 307 IIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 438
           ++ETPPM+ VG VGYIETP GLRAL+ VWA+H+SE+CRRRFYKN
Sbjct: 65  VLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKN 108


>AY071423-1|AAL49045.1|  330|Drosophila melanogaster RE50471p
           protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 571 TQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWTREHLEKPIPGR 699
           T M +   R++  + +E+  N G +E  ++W   H++ PIP R
Sbjct: 6   TLMDMGFPRERVEYALEVTSNKG-VEPAMEWLLAHVDDPIPSR 47


>AY069272-1|AAL39417.1|  331|Drosophila melanogaster GM09977p
           protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 571 TQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWTREHLEKPIPGR 699
           T M +   R++  + +E+  N G +E  ++W   H++ PIP R
Sbjct: 6   TLMDMGFPRERVEYALEVTSNKG-VEPAMEWLLAHVDDPIPSR 47


>AE014296-1353|AAF50499.1|  331|Drosophila melanogaster CG8209-PA
           protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 571 TQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWTREHLEKPIPGR 699
           T M +   R++  + +E+  N G +E  ++W   H++ PIP R
Sbjct: 6   TLMDMGFPRERVEYALEVTSNKG-VEPAMEWLLAHVDDPIPSR 47


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,627,192
Number of Sequences: 53049
Number of extensions: 904060
Number of successful extensions: 2235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2225
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4311772920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)