Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_D09
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 62 9e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 57 3e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 57 3e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 55 1e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 55 1e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 2e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 53 6e-08
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 52 1e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 51 2e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 51 2e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 50 3e-07
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 50 3e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 50 4e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 50 5e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 49 7e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 49 9e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 48 2e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 47 4e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 45 1e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 3e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 8e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 42 1e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 40 5e-04
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 37 0.003
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 34 0.027
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.036
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.036
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 30 0.44
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 1.4
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 3.1
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 3.1
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 27 4.1
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 26 5.5
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 26 7.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 9.6
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 62.1 bits (144), Expect = 9e-11
Identities = 30/63 (47%), Positives = 38/63 (60%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTARIRCCGNVSLTERSGFVRYXN 747
TDVAARGLD+P VDLV+QY AP S DY+HR+GRT R L + S ++
Sbjct: 503 TDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLK 562
Query: 748 KNV 756
+V
Sbjct: 563 SSV 565
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 57.2 bits (132), Expect = 3e-09
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 547 SGTR--LNKTDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
SG R L TDVAARGLD+P VD+V+ Y P + Y+HRVGRT R R
Sbjct: 333 SGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGR 381
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGR 678
TDVAARGLD+P+V LV+ P + DYVHR+GRTGR
Sbjct: 473 TDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGR 509
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTARIRCCGNVSLT-ERSGFVRY 741
T+VAARGLD+P VD ++QY P DY+HRVGRT R + + L GF+RY
Sbjct: 393 TNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRY 451
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
TDVA+RGLD+P V LV+ + P DY+HRVGRT R R
Sbjct: 315 TDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGR 354
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.0 bits (124), Expect = 2e-08
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
TD+A RG+D+P V LVL Y S DY HR+GRTGR +
Sbjct: 573 TDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGK 612
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.8 bits (121), Expect = 6e-08
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
TDV ARG+D P + V+Q P++ DY+HR+GRTGR +
Sbjct: 350 TDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGK 389
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
TD+ ARG+DV +V LV+ Y PA+ +Y+HR+GR+GR R
Sbjct: 317 TDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGR 356
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGR 678
T VA+RGLD+P V V+ Y P DYVHR+GRTGR
Sbjct: 487 TAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGR 523
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
TD+ ARGLD P VD V+Q AP Y+HRVGRT R R
Sbjct: 342 TDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNR 381
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
TDVA+RG+D+ +++V+ Y APA+ Y+HRVGRT R R
Sbjct: 561 TDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGR 600
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
TD+ ARG+DV +V LV+ Y PA+ +Y+HR+GR GR R
Sbjct: 315 TDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGR 354
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/45 (51%), Positives = 27/45 (60%)
Frame = +1
Query: 553 TRLNKTDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
T L TD+A+RGLD+P VD VLQ P + HR GR GR R
Sbjct: 311 TVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGR 355
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGR 678
T V ARGLDV + LV+ Y P DYVHRVGRTGR
Sbjct: 725 TSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGR 761
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 49.2 bits (112), Expect = 7e-07
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGR 678
TDVA+RG+DV + V Y P + DYVHR+GRTGR
Sbjct: 426 TDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGR 462
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRT----ARIRCCGNVSLTE 720
TDVAARG+D+P V V+ Y P +A YVHR GRT R I CG L++
Sbjct: 446 TDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQ 500
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 48.0 bits (109), Expect = 2e-06
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGR 678
TDV RG+D+ RV++V+ Y P S Y+HRVGR GR
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGR 388
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 46.8 bits (106), Expect = 4e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTARIRCCGNVSLTERSGFV 735
TDVA+RG+D+P + V+ Y P +VHRVGRT R R ++ E +G++
Sbjct: 403 TDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYL 458
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
+D+ ARG+DV V+ Y P S YVHR+GRT R R
Sbjct: 494 SDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGR 533
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGR 678
TD+ ARG+D V +V+ + P S Y+HR+GRTGR
Sbjct: 345 TDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGR 381
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 42.3 bits (95), Expect = 8e-05
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAP---ASATD---YVHRVGRTGRTARI 690
T+V ARG+DV +V+LV+ Y P A D Y+HR+GRTGR R+
Sbjct: 409 TNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRV 455
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTA-RIRCCGNVSLTERSGFVRYX 744
+D+ RG+D+ V++V+ + P +A Y+HR+GR+GR R +S +R R
Sbjct: 338 SDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIE 397
Query: 745 NK 750
N+
Sbjct: 398 NE 399
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 580 ARGLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
ARGLD V VL + P++ Y+HR+GRT R +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGK 422
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGR 678
T + GLD+ VD+++ Y A AS + R+GRTGR
Sbjct: 499 TSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 33.9 bits (74), Expect = 0.027
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGRTGR 678
T + GLD+ D+++ Y A +S + R+GRTGR
Sbjct: 538 TSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 586 GLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
G++ V LV+ Y PAS+ DYV GR GR +
Sbjct: 1484 GINYMGVRLVVHYGLPASSMDYVQETGRAGRDGK 1517
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 586 GLDVPRVDLVLQYCAPASATDYVHRVGRTGRTAR 687
G++ V LV+ Y PAS+ DYV GR GR +
Sbjct: 1484 GINYMGVRLVVHYGLPASSMDYVQETGRAGRDGK 1517
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 29.9 bits (64), Expect = 0.44
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 568 TDVAARGLDVPRVDLVLQYCAPASATDYVHRVGR 669
T VA G+DVP +LV+++ + T YV GR
Sbjct: 430 TAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR 463
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 119 CKRLCPRSYCGVLC 78
C R CP S CG+LC
Sbjct: 3 CNRTCPSSDCGILC 16
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -3
Query: 691 GYAPFVRYAQPCEHNQLRMRVRSTARRGPLEARPSHGPPHPSCLTVF 551
GY P + Q + +R+ A R E PS+G C T F
Sbjct: 247 GYVPVINRGQKDIEGKKSIRIALEAERNFFETHPSYGSKAQYCGTPF 293
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 361 PPVNSMQVHVAVYSASSSWRVRAPPGTDRPRGTSTTSRSCSAAG--SV*CLDGSSTCGWP 534
PP +S A S S+ A G+ TSTT+ S + G + GS+T P
Sbjct: 186 PPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANSGFSFGKPATTSAPGSNTTVTP 245
Query: 535 AVDLSGTRLNKTDVAARG 588
+ ++GT +K + G
Sbjct: 246 SSSITGTNDSKPAASNTG 263
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 275 KHGYNRFIRLQNVVSY 228
KHGYN ++RL+ + Y
Sbjct: 483 KHGYNEYMRLKQITQY 498
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 83 KPHNNS*DITFYSAKVYATRAPCYEYVI*QRSVVMRMVLCVQCSDVNNDMKQ 238
K NN D T A ++AT Y S ++R VL + SDVN+D+++
Sbjct: 551 KELNNDLDPTLRYAGMFAT---ALAYCGTSNSKIVRDVLHISVSDVNDDVRR 599
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 238 LFHIIIHVRTLNAKHHSHYYTALLNHIFV 152
LF +I+H TLN + HY +L+H F+
Sbjct: 798 LFGVIVHSGTLN---YGHYVAYVLSHKFL 823
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 290 VLSTLASKTNNAFCVAEVNCLGEFHR*TQC 379
+L ++ +K + C+ CL EF+R T C
Sbjct: 926 LLYSIINKETSVPCIGPERCLLEFYRETDC 955
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -3
Query: 706 HYRSTGYAPFVRYAQPCEHNQLRMRVRSTARRGPLEARPSHGPP 575
H S +PF P HN L + + R P+ PSH P
Sbjct: 124 HACSNNQSPFPHSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYP 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,435,322
Number of Sequences: 5004
Number of extensions: 74696
Number of successful extensions: 229
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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