Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_D08
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 183 3e-47
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 183 3e-47
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 7.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 9.7
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.7
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 183 bits (445), Expect = 3e-47
Identities = 84/129 (65%), Positives = 93/129 (72%)
Frame = +2
Query: 179 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 358
LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24 LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83
Query: 359 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 538
THRSGQ AFGNMCR GRMFAPTK WR+WH ARGH
Sbjct: 84 THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHR 143
Query: 539 IEKIPELPL 565
IE+IPE+PL
Sbjct: 144 IEEIPEVPL 152
Score = 60.5 bits (140), Expect = 3e-10
Identities = 32/85 (37%), Positives = 44/85 (51%)
Frame = +3
Query: 540 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDIL*GVQVSXSSCWXG*NAQRSSYP 719
++ P P VV D VQ KTK+AV L+ +KA+ D++ G R
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203
Query: 720 A*GAPHIFNKDQGLXRAFRNIPGVE 794
G +FN+D G+ +AFRNIPGVE
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIPGVE 228
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 655 KVYKSXRLRAGXGKMRNGRRIQRKGPLI 738
KV S +LRAG GK+RN R +QR+GPL+
Sbjct: 182 KVANSRKLRAGKGKLRNRRHVQRRGPLV 209
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 183 bits (445), Expect = 3e-47
Identities = 84/129 (65%), Positives = 93/129 (72%)
Frame = +2
Query: 179 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 358
LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24 LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83
Query: 359 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 538
THRSGQ AFGNMCR GRMFAPTK WR+WH ARGH
Sbjct: 84 THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHR 143
Query: 539 IEKIPELPL 565
IE+IPE+PL
Sbjct: 144 IEEIPEVPL 152
Score = 60.1 bits (139), Expect = 4e-10
Identities = 32/85 (37%), Positives = 44/85 (51%)
Frame = +3
Query: 540 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDIL*GVQVSXSSCWXG*NAQRSSYP 719
++ P P VV D VQ KTK+AV L+ +KA+ D++ G R
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203
Query: 720 A*GAPHIFNKDQGLXRAFRNIPGVE 794
G +FN+D G+ +AFRNIPGVE
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIPGVE 228
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 655 KVYKSXRLRAGXGKMRNGRRIQRKGPLI 738
KV S +LRAG GK+RN R +QR+GPL+
Sbjct: 182 KVANSRKLRAGKGKLRNRRHVQRRGPLV 209
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -1
Query: 123 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 46
K+G LP+ SF Y + +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 540 LKRFPSFPWVVAD 578
L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -3
Query: 577 SATTQGKLGNLFNNVSSSLNE 515
SAT+ +L ++F+N+SSS+++
Sbjct: 670 SATSNSQLSSIFSNLSSSISD 690
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +2
Query: 533 HIIEKIPELPLGCSRQSPRDQQDQTGCH 616
H++EK+ E+ + C R ++ CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,866
Number of Sequences: 5004
Number of extensions: 56696
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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