Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D08
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   155   3e-38
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.98 
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  155 bits (377), Expect = 3e-38
 Identities = 73/129 (56%), Positives = 87/129 (67%)
 Frame = +2

Query: 179 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 358
           LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGG
Sbjct: 23  LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGG 82

Query: 359 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 538
           THRSGQGAFGNMCRGG MFAP K +RRWH                         QARGH+
Sbjct: 83  THRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHV 142

Query: 539 IEKIPELPL 565
           I+++ E+PL
Sbjct: 143 IDQVAEVPL 151



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 32/78 (41%), Positives = 41/78 (52%)
 Frame = +3

Query: 561 PWVVADKVQEINKTKQAVIFLRRLKAWSDIL*GVQVSXSSCWXG*NAQRSSYPA*GAPHI 740
           P VV+DKV+   KTK+AV+FLRR   W+DI        +    G    R      G   I
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209

Query: 741 FNKDQGLXRAFRNIPGVE 794
           + +D    RAFRNIPGV+
Sbjct: 210 YGQDAECARAFRNIPGVD 227


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +2

Query: 248 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 418
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 419 PTKP 430
             KP
Sbjct: 197 APKP 200


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 404 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 321
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 541 NNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 434
           N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 625 NGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,410,307
Number of Sequences: 27780
Number of extensions: 340586
Number of successful extensions: 993
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)