Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D06
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.26 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.4  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.2  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   3.2  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.2  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   7.4  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 342
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 716 APVPXGGGXPXXPXGPRGGXPPXWXXPPPP 805
           AP+  G   P  P G  G  PP    PPPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPP-PPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 737 GXPXXPXGPRGGXPPXWXXPPPP 805
           G P  P  P G  PP    PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 503 WPNDMQTCTFKFGSRMHNSDEXDXXIDKXIYXMV 604
           WP D+ T    FG+     D  D   D+ +Y MV
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMV 138


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 319 FPCVPTQSFVDPIHLKICQYPHGGL 245
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 419 RARVSNNGSVSWIKRLDISTPXXMQLDNWPNDMQTCTFKFGSRMHN 556
           RA +++   +  +KR DI     +  DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHR---VFADNWINDISMCHMENGKVIHS 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,572
Number of Sequences: 5004
Number of extensions: 56158
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)