Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_D06
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0302 - 2021221-2023305 33 0.21
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.47
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 31 1.4
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 1.9
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 2.5
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.3
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 29 4.4
02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058 29 4.4
02_04_0170 + 20576149-20576889 29 4.4
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.8
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.7
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.7
>02_01_0302 - 2021221-2023305
Length = 694
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -2
Query: 745 GPAPXRGXRGPX-PGXTSGXXXGSFPLPXG--PAXXXPXPDPSHPTXPXSNHXVY 590
G +P RG +GP P + G +P P P P P S+P P SN Y
Sbjct: 390 GGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSYPAPPGSNTPSY 444
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.47
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 343 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 722 VPXGGGXPXXPXGPRGGXPPXWXXPPPP 805
+P G G P P P+ PP PPPP
Sbjct: 257 LPNGSGGPPRPPPPQVPPPPPQAPPPPP 284
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 719 PVPXGGGXPXXPXGPRGGXPPXWXXPPP 802
P P GG P P P PP PPP
Sbjct: 297 PPPVGGTQPPPPPPPLANGPPRSIPPPP 324
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 357
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 719 PVPXGGGXPXXPXGPRGGXPPXWXXPPPP 805
P P G P P G GG PP PPPP
Sbjct: 923 PRPPGAPPPPPPPGKPGGPPP---PPPPP 948
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 256 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 167
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = -2
Query: 745 GPAPXRGX--RGPXPGXTSGXXXGSFPLPXGPAXXXPXPDP 629
GP P RGP PG G G F LP A P P P
Sbjct: 31 GPNPNNSYHRRGP-PGGGGGDRRGGFQLPPDAAPPPPPPPP 70
>02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058
Length = 365
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 742 PAPXRGXRG---PXPGXTSGXXXGSFPLPXGPAXXXPXPDPS 626
P P R RG P P + G++PLP A P P P+
Sbjct: 212 PVPQRAARGATAPTPRPVAPPQAGTWPLPAPAAMPPPPPPPT 253
>02_04_0170 + 20576149-20576889
Length = 246
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 742 PAPXRGXRG---PXPGXTSGXXXGSFPLPXGPAXXXPXPDPS 626
P P R RG P P + G++PLP A P P P+
Sbjct: 93 PVPQRAARGATAPTPRPVAPPQAGTWPLPAPAAMPPPPPPPT 134
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 716 APVPXGGGXPXXPXGPRGGXPP 781
AP P GGG P G GG PP
Sbjct: 97 APGPLGGGGARPPGGGGGGGPP 118
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 283
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 370 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 203
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,890,529
Number of Sequences: 37544
Number of extensions: 555776
Number of successful extensions: 2170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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