Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D04
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.26 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    28   1.4  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.2  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.6  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   9.6  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 235 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 336
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -3

Query: 603 LXHTVYSFVKSPKSISSLLCILEPNL-NVQVCMSLGQLSNCIEIGVLMSKRFIQ 445
           L  TVY++ + PKS  S      PNL ++++CM   ++ +  E  +++S R++Q
Sbjct: 368 LKQTVYNYQEDPKSTLSFKKNYTPNLSSLKLCMVECEVVD-PEFNIIVSDRWLQ 420


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 313 FPCVPTQSFVDPIHLKICQYPHGGL 239
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 413 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 550
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +2

Query: 386  ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 565
            ATT GDYA + ++  N  ++     D S  ++   D +   + T   K  S +  S E D
Sbjct: 1367 ATTTGDYAEKLKLLRNQDIN-----DFSLGLASYSDIFDKPLVTLPVKKSSAVDES-END 1420

Query: 566  FGDLTKE 586
            F D   E
Sbjct: 1421 FYDRNDE 1427


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 452 KRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFGDL 577
           K LD S+  SM++++W N       +  SR+H S  +   D+
Sbjct: 162 KFLDKSSG-SMEIESWDNSTSDSIIESSSRLHESISLRENDI 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,208
Number of Sequences: 5004
Number of extensions: 59920
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)