Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D03
         (753 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator...    31   3.4  
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator...    31   3.4  
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix...    31   3.4  
BC139924-1|AAI39925.1|  584|Homo sapiens SMARCA4 protein protein.      31   3.4  
BC139917-1|AAI39918.1|  584|Homo sapiens SMARCA4 protein protein.      31   3.4  
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.    31   3.4  
AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.    31   3.4  

>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
           protein.
          Length = 1647

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 402 GXPPGXXPXXPGFLXGPSPGXRXGFXPXFXGXKXGPXXXNXP 527
           G  PG  P  PG + GPSPG   G      G   GP     P
Sbjct: 15  GPSPGPGPS-PGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHP 55


>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
           hSNF2b protein.
          Length = 1647

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 402 GXPPGXXPXXPGFLXGPSPGXRXGFXPXFXGXKXGPXXXNXP 527
           G  PG  P  PG + GPSPG   G      G   GP     P
Sbjct: 15  GPSPGPGPS-PGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHP 55


>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 1647

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 402 GXPPGXXPXXPGFLXGPSPGXRXGFXPXFXGXKXGPXXXNXP 527
           G  PG  P  PG + GPSPG   G      G   GP     P
Sbjct: 15  GPSPGPGPS-PGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHP 55


>BC139924-1|AAI39925.1|  584|Homo sapiens SMARCA4 protein protein.
          Length = 584

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 402 GXPPGXXPXXPGFLXGPSPGXRXGFXPXFXGXKXGPXXXNXP 527
           G  PG  P  PG + GPSPG   G      G   GP     P
Sbjct: 15  GPSPGPGPS-PGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHP 55


>BC139917-1|AAI39918.1|  584|Homo sapiens SMARCA4 protein protein.
          Length = 584

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 402 GXPPGXXPXXPGFLXGPSPGXRXGFXPXFXGXKXGPXXXNXP 527
           G  PG  P  PG + GPSPG   G      G   GP     P
Sbjct: 15  GPSPGPGPS-PGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHP 55


>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
          Length = 1647

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 402 GXPPGXXPXXPGFLXGPSPGXRXGFXPXFXGXKXGPXXXNXP 527
           G  PG  P  PG + GPSPG   G      G   GP     P
Sbjct: 15  GPSPGPGPS-PGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHP 55


>AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.
          Length = 1679

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = +3

Query: 402 GXPPGXXPXXPGFLXGPSPGXRXGFXPXFXGXKXGPXXXNXP 527
           G  PG  P  PG + GPSPG   G      G   GP     P
Sbjct: 15  GPSPGPGPS-PGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHP 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,193,356
Number of Sequences: 237096
Number of extensions: 1972678
Number of successful extensions: 5201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5132
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)