Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_D03
(753 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.005
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 32 0.005
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 29 0.035
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 27 0.25
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.8
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 23 3.1
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 3.1
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 22 5.4
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 7.1
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 9.4
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.005
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 122 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 289
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 290 IDKRLGWNAG 319
+D+RL + G
Sbjct: 62 VDRRLAFQGG 71
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 32.3 bits (70), Expect = 0.005
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +2
Query: 116 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 280
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 281 MNWIDKRLGWNA 316
+ W L W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.5 bits (63), Expect = 0.035
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +2
Query: 143 MIDSLLATYDR------ESPPDSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKR 301
++D++L YD E+ D +V + L +R A I + + + + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 302 LGWNAGGMGLQHLAGVLGNACW 367
L +N G L++L + W
Sbjct: 95 LRFNDFGGRLKYLTLTDASRVW 116
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 26.6 bits (56), Expect = 0.25
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +2
Query: 143 MIDSLLATYDR------ESPPDSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKR 301
++D++L YD E+ D VV + + +R + I + + + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDER 94
Query: 302 LGWNAGGMGLQHLAGVLGNACW 367
L +N G L++L + W
Sbjct: 95 LRFNDFGGRLKYLTLTDASRVW 116
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.3
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = +2
Query: 143 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLG 307
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 308 WNAGGMGLQHLAGVLGNACW 367
WN G + N W
Sbjct: 118 WNESEYGGVKDLRITPNKLW 137
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.2 bits (50), Expect = 1.3
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Frame = +2
Query: 143 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLG 307
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 308 WNAGGMGLQHLAGVLGNACW 367
WN G + N W
Sbjct: 118 WNESEYGGVKDLRITPNKLW 137
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLGWNAGGMGLQHLAGVLGNACW 367
++ E + A L++ W+D L WN G + N W
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLGWNAGGMGLQHLAGVLGNACW 367
++ E + A L++ W+D L WN G + N W
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLGWNAGGMGLQHLAGVLGNACW 367
++ E + A L++ W+D L WN G + N W
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLGWNAGGMGLQHLAGVLGNACW 367
++ E + A L++ W+D L WN G + N W
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLGWNAGGMGLQHLAGVLGNACW 367
++ E + A L++ W+D L WN G + N W
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLGWNAGGMGLQHLAGVLGNACW 367
++ E + A L++ W+D L WN G + N W
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLW 69
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.0 bits (47), Expect = 3.1
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 122 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 289
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 290 IDKRLGW 310
D RL +
Sbjct: 68 TDPRLAF 74
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.0 bits (47), Expect = 3.1
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 194 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLGWNA---GGMGLQHL 340
K+ VN L ++ N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
Score = 21.4 bits (43), Expect = 9.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 370 LPTSVXEDTSQVLQPHSPCVPTQSFVDPIHLKICQYPH 257
LPTS + L H P T+S ++ + L +P+
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPN 404
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 22.2 bits (45), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 359 RXRGHQPSAAAPFPLRSNPVVCRSNSFEDLPVSAR 255
R RG+QPS + RS V R+ S + +S R
Sbjct: 345 RARGNQPSTSECGEFRSVVVQKRNGSMIECNISPR 379
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 7.1
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 122 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 289
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 290 IDKRLGW 310
D RL +
Sbjct: 68 TDPRLAF 74
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.4 bits (43), Expect = 9.4
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = -3
Query: 415 PGGXPPXXXXPXXXALPTSVXEDTSQVLQPH--SPCVPTQSFVDPIHLKICQ 266
P G PP P S Q+LQ H SP QSF+ L + Q
Sbjct: 51 PPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSP-TQLQSFMQQHSLYLQQ 101
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,907
Number of Sequences: 438
Number of extensions: 4399
Number of successful extensions: 23
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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