Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_D02
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.47 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.3  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.7  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 210 VRVHRADTGRSSNELDRQTTELERR 284
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 31/130 (23%), Positives = 34/130 (26%), Gaps = 3/130 (2%)
 Frame = -3

Query: 670  PXAXRXXSXAPPXXPPRXPXXXPPXXRPGGXXPXXXGXXXXXXXHPKGXXXXXXXXXLXV 491
            P   +    APP   P+     PP   P G  P            P              
Sbjct: 1092 PPVPKPSVAAPPV--PKPSVAVPPVPAPSGAPPVPKPSVAAPPV-PVPSGAPPVPKPSVA 1148

Query: 490  SMXXXXPXGGGPRXXXXFGXPPXPXPXXG--XWPPPPVXXXXXPPXGE-XXXPXXGVXRX 320
            +     P G  P        PP P P  G    P P       PP  E    P   V   
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208

Query: 319  XHPGPSAAAP 290
              P PS A P
Sbjct: 1209 PVPPPSTAPP 1218



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
 Frame = -3

Query: 472  PXGGGPRXXXXFGXPPXPXPXXGXWPPPP---VXXXXXPPXGEXXXPXXGVXRXXHPGPS 302
            P  G P        PP P P  G  P PP         P  G    P         P PS
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243

Query: 301  AAAP 290
            + AP
Sbjct: 1244 SEAP 1247


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 134 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 36
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 279 VPTQSFVDPIHLKICQYPHGGL 214
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,340
Number of Sequences: 5004
Number of extensions: 36443
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)