Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C21
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.039
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.27 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 17/40 (42%), Positives = 17/40 (42%)
 Frame = +1

Query: 724 PPXAPAXXGPGPXXPXXVPPXXAPXGXXXPPPXXPXXXXG 843
           PP AP   GP P  P   PP  A  G   PPP  P    G
Sbjct: 752 PPPAPIMGGPPPPPP---PPGVAGAGPPPPPPPPPAVSAG 788



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +1

Query: 703 RXVXRGXPPXAPAXXGPGPXX-PXXVPPXXAPXGXXXPPPXXPXXXXG 843
           + + +  PP  PA   P P   P  VPP  AP     PPP  P    G
Sbjct: 726 KLLLKSPPPPPPAVIVPTPAPAPIPVPPP-APIMGGPPPPPPPPGVAG 772


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 242 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 343
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 166 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 68
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
 Frame = +1

Query: 658 PXXXGXVXTPGGXXPRX-VXRGXPPXAPAXXGPGPXXPXXVPPXXAPXGXXXPPPXXP 828
           P     +  P    PR  +    P  AP      P  P  +PP   P      PP  P
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
 Frame = +1

Query: 676  VXTPGGXXPRXVXRGXPP-XAPAXXGPG-PXXPXXVPPXXAPXGXXXPPPXXP 828
            +  P G  P     G PP   P+   P  P     VPP  AP G   PP   P
Sbjct: 1076 IPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG--APPVPKP 1126


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 320 FPCVPTQSFVDPIHLKICQYPHGGL 246
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,396
Number of Sequences: 5004
Number of extensions: 53296
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)