Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C19
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    31   1.0  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   5.4  
12_02_0077 - 13288916-13289659,13289689-13289691                       28   9.4  
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550...    28   9.4  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 139  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 285
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 468 TTXHAWNETPCARRYY 421
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>12_02_0077 - 13288916-13289659,13289689-13289691
          Length = 248

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 289 ESSSTGSSFPADSPKPVPLAVVSLDSR 209
           ++ S G S P DS + VP+ VV+L  R
Sbjct: 3   DNQSLGKSLPKDSRRHVPVGVVALKKR 29


>04_01_0416 -
           5504415-5504590,5509032-5509116,5509190-5509322,
           5509426-5510312
          Length = 426

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 319 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 212
           PL+ P  AR   SSTGSSFP  S  P    ++ L S
Sbjct: 47  PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,332,901
Number of Sequences: 37544
Number of extensions: 301198
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)