Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_C18
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 54 3e-08
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 50 3e-07
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 36 0.009
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 34 0.021
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 34 0.027
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 33 0.036
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 33 0.036
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 33 0.036
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 33 0.063
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 32 0.083
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 31 0.15
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 31 0.15
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 31 0.25
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 31 0.25
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 30 0.34
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 29 0.59
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 29 0.78
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 1.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 29 1.0
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 28 1.8
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 28 1.8
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 28 1.8
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 2.4
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 2.4
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 3.1
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 3.1
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 27 4.1
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 26 5.5
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 5.5
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 26 5.5
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 7.2
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 7.2
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 25 9.6
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 25 9.6
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 9.6
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.6
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 25 9.6
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 53.6 bits (123), Expect = 3e-08
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +3
Query: 390 VSALAHGEVVCAVTVSSPTKYVYTGGKGCVKVWDISQPSKXPVSQLDCLQ--RDNYIRSV 563
V L H VVC V S+ KY+ TG V+D+ K + RD Y+R++
Sbjct: 307 VHTLEHPSVVCCVKFSNNGKYLATGCNQAANVFDVQTGKKLFTLHEESPDPSRDLYVRTI 366
Query: 564 KLLPDGRTLIVGGEASNLSIWDLAS 638
PDG+ L+ G E + +WDL++
Sbjct: 367 AFSPDGKYLVTGTEDRQIKLWDLST 391
Score = 35.1 bits (77), Expect = 0.012
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 405 HGEVVCAVTVSSPTKYVYTGGKG-CVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDG 581
H + V +V VS +++ +G K ++ WD+ S L C N + SV PDG
Sbjct: 537 HTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQ----SYLTCQGHKNSVISVCFSPDG 592
Query: 582 RTLIVGGEASNLSIWDLASPTP 647
R G IW + +P
Sbjct: 593 RQFASGSGDLRARIWSIDPASP 614
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 417 VCAVTVSSPTKYVYTGGKG-CVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLI 593
V A+ +S +++ G ++VW +S V +L+ + Y S+ PD L+
Sbjct: 446 VTAIAISPNDQFIAVGSLDQIIRVWSVSGTL---VERLEGHKESVY--SIAFSPDSSILL 500
Query: 594 VGGEASNLSIWDL 632
G + +W+L
Sbjct: 501 SGSLDKTIKVWEL 513
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 50.4 bits (115), Expect = 3e-07
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 372 PRHARQVSALAHGEVVCAVTVSSPTKYVYTGGKGCVKVWDISQPSKXPVSQLDCLQR--D 545
P + + L H V+C V S+ K++ TG V+++ + Q + +R D
Sbjct: 275 PISVQLLHTLEHTSVICYVRFSADGKFLATGCNRAAMVFNVETGKLITLLQEESSKREGD 334
Query: 546 NYIRSVKLLPDGRTLIVGGEASNLSIWDLA 635
Y+RSV PDG+ L G E + IWD+A
Sbjct: 335 LYVRSVAFSPDGKYLATGVEDQQIRIWDIA 364
Score = 33.9 bits (74), Expect = 0.027
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 405 HGEVVCAVTVSSPTKYVYTGGKG-CVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDG 581
H + + +VTVS K++ +G K ++ W P SQL +N + SV + P+G
Sbjct: 511 HKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPH----SQLTLQGHNNSVISVAVSPNG 566
Query: 582 RTLIVGGEASNLSIW 626
G IW
Sbjct: 567 HCFATGSGDLRARIW 581
Score = 32.3 bits (70), Expect = 0.083
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 384 RQVSALAHGEV-VCAVTVSSPTKYVYTGGKGC-VKVWDISQPSKXPVSQLDCLQRDNYIR 557
++ S+ G++ V +V S KY+ TG + +++WDI+Q K L +++ Y
Sbjct: 325 QEESSKREGDLYVRSVAFSPDGKYLATGVEDQQIRIWDIAQ--KRVYRLLTGHEQEIY-- 380
Query: 558 SVKLLPDGRTLIVGGEASNLSIWDL 632
S+ DG+TL+ G + +WD+
Sbjct: 381 SLDFSKDGKTLVSGSGDRTVCLWDV 405
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 405 HGEVVCAVTVSSPTKYVYTG-GKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDG 581
H + + ++ S K + +G G V +WD+ + + L D+ + +V PDG
Sbjct: 375 HEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLI-----LHTDDGVTTVMFSPDG 429
Query: 582 RTLIVGGEASNLSIW 626
+ + G + IW
Sbjct: 430 QFIAAGSLDKVIRIW 444
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 552 IRSVKLLPDGRTLIVGGEASNLSIWDL 632
+ SV PDG+ L+ G + + +W+L
Sbjct: 461 VYSVAFSPDGKYLVSGSLDNTIKLWEL 487
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +3
Query: 432 VSSPTKYVYTGGKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEAS 611
+S K++ G V+++DI+ S+ P+ + N + ++ DG+ L E
Sbjct: 48 ISPDKKFLAAAGNPHVRLYDINTSSQMPLMTFE--GHTNNVTAIAFHCDGKWLATSSEDG 105
Query: 612 NLSIWDLASPT 644
+ +WD+ +P+
Sbjct: 106 TVKVWDMRAPS 116
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 34.3 bits (75), Expect = 0.021
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +3
Query: 450 YVYTGGKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWD 629
+V G VKVWD+ S + Y+ +V + PDG GG L +WD
Sbjct: 165 FVSAGWDKAVKVWDLETFSL----RTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWD 220
Query: 630 LASPT 644
L T
Sbjct: 221 LNEST 225
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 399 LAHGEVVCAVTVSSPTKYVYTGGKG-CVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLP 575
+ H V +V++S + V +G + +K+W+I K ++ +++ V+ P
Sbjct: 102 VGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGNCKYTITDGG---HSDWVSCVRFSP 158
Query: 576 --DGRTLIVGGEASNLSIWDL 632
D T + G + +WDL
Sbjct: 159 NPDNLTFVSAGWDKAVKVWDL 179
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 33.9 bits (74), Expect = 0.027
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +3
Query: 387 QVSALAHGEVVCAVTVSSPTKYVYTGGKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVK 566
+V + +HGE + V V + G +KVWD+ + P +L Q+ I +
Sbjct: 200 EVMSFSHGEAIDVVLPMQSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQKS--ITCLA 257
Query: 567 LLPDGRTLIVGGEASNLSIWDLA 635
+ + L+ GG ++ I++++
Sbjct: 258 MNSENTRLLSGGLDGHVKIYNIS 280
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 33.5 bits (73), Expect = 0.036
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 408 GEVVCAVTVSSPTKYVYTGGKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRT 587
G ++ + +S T+ V G VKVW +S S V+ LD ++ + ++ DG
Sbjct: 550 GAILKLIYISQGTQVVSAAADGLVKVWSLS--SGECVATLD--NHEDRVWALASRFDGSL 605
Query: 588 LIVGGEASNLSIW 626
L+ GG + +S+W
Sbjct: 606 LVSGGADAVVSVW 618
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 369 IPRHARQVSALAHGEVVCAVTVSSPTKYVYTGG-KGCVKVWDIS 497
IP R S AH V +T+ + TGG +G VKVWDI+
Sbjct: 90 IPSGRRIKSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWDIA 133
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/86 (19%), Positives = 33/86 (38%)
Frame = +3
Query: 543 DNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPXIKAELTXSXXRLLRACYQPRI*GL 722
D + ++++ DGR + + + +WD S T + L + + P L
Sbjct: 465 DRDVNAIQVSKDGRIIASASQDKTIKLWD--SSTGEVVGVLRGHRRGVWACSFNPFSRQL 522
Query: 723 LXLWSDXXITVWDFPNQGLXQXFQGN 800
D I +W+ Q Q +G+
Sbjct: 523 ASGSGDRTIRIWNVDTQQCVQTLEGH 548
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 33.5 bits (73), Expect = 0.036
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 435 SSPTKYVYTGGKGCVKVWD-ISQPSKXPVSQLDCLQRDNY-IRSVKLLPDGRTLIVGGEA 608
+S K+ GG +++W I+ S V L L R + V+ P+G L G+
Sbjct: 29 NSLNKFATCGGDSKIRIWQLITSESSTKVEYLSTLSRHTQAVNVVRFNPEGNILATAGDE 88
Query: 609 SNLSIW 626
+ +W
Sbjct: 89 GTIMLW 94
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 33.5 bits (73), Expect = 0.036
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +3
Query: 420 CAVTVSSPTKYVYTGGKGCVKVWDISQPSKXPVSQL-DCLQRDNYIRSVKLLPDGRTLIV 596
CA + P + G ++ W +K PV ++ D I + DG L+
Sbjct: 256 CAWNPAKPDNFATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQDGNYLLS 315
Query: 597 GGEASNLSIWDLASPTPXIKAEL 665
GE + L +WDL + + +
Sbjct: 316 RGEDNALRVWDLRNSNKCVNERI 338
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 32.7 bits (71), Expect = 0.063
Identities = 23/120 (19%), Positives = 52/120 (43%)
Frame = +3
Query: 279 NTSRAYSFHVSAEGQMQPVPFPPDALMGPGIPRHARQVSALAHGEVVCAVTVSSPTKYVY 458
N+ Y+ V +EG P+ + IP H V LA +S+ +
Sbjct: 362 NSIEVYALDVKSEGSAAPLTERASRISAIEIPGHRADVRTLA---------LSANHDVIL 412
Query: 459 TGGKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS 638
+G G +K+W ++ + + ++C Y+ + + + + ++ ++ L ++D+AS
Sbjct: 413 SGANGSLKLW--NKKTTSCIRTIEC----GYVLAASFINNDKCIVSAYKSGELEVYDIAS 466
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 405 HGEVVCAVTVSSPTKYVYTGGKGC-VKVWDISQP 503
H + A+ VS K T G G VKVW+IS P
Sbjct: 214 HQGEIWAMCVSPDAKRCLTAGTGSDVKVWEISFP 247
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +3
Query: 435 SSPTKYVYTGGKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASN 614
SS + + G +K+WD+S + I ++ + PD + + G S+
Sbjct: 183 SSDSFLLSVGKDSFMKLWDLSIQHCVETH----VDHQGEIWAMCVSPDAKRCLTAGTGSD 238
Query: 615 LSIWDLASP 641
+ +W+++ P
Sbjct: 239 VKVWEISFP 247
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 32.3 bits (70), Expect = 0.083
Identities = 20/84 (23%), Positives = 32/84 (38%)
Frame = +3
Query: 549 YIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPXIKAELTXSXXRLLRACYQPRI*GLLX 728
++R V + P + G + IWDLAS +K LT + PR L
Sbjct: 165 WVRCVDVEPGNQWFCTGAGDRTIKIWDLASGV--LKLTLTGHIATVRGLAVSPRHPYLFS 222
Query: 729 LWSDXXITVWDFPNQGLXQXFQGN 800
D + WD + + + G+
Sbjct: 223 CGEDKMVKCWDLETNKVIRHYHGH 246
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 31.5 bits (68), Expect = 0.15
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Frame = +3
Query: 471 GCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS---- 638
G V +W S S P+ ++ L +R + + DGR ++ G S L +WDL +
Sbjct: 245 GQVTLW--SPSSTTPLVKM--LTHRGPVRDLAVNRDGRYMVTAGADSLLKVWDLRTYKEL 300
Query: 639 ---PTPXIKAELTXSXXRLLRACYQPRI*GLLXLWSDXXITVWDFP 767
TP LT S LL + P +W D T +FP
Sbjct: 301 HSYYTPTPAQRLTLSDRGLLAVGWGPH----ATIWKDALRTKQNFP 342
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 31.5 bits (68), Expect = 0.15
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +3
Query: 447 KYVYTGG-KGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSI 623
+++YTG +K W++S + V L + +Y++ + LL + L+ G ++L +
Sbjct: 103 RHIYTGSWDHTIKKWNVS--TGECVETL--IGHTDYVKCLLLLEEEGLLLSGSTDASLIV 158
Query: 624 WDLASPTPXIKAELTXSXXRLLRACYQPRI*GLLXLWSDXXITVWDFPNQG 776
WD++S + +LT + QP S+ I W G
Sbjct: 159 WDVSSQPSRLLYKLTGHSRGIECITRQPNTDIFWTCGSESSIRCWHITKVG 209
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 30.7 bits (66), Expect = 0.25
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 531 CLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 632
CL ++++ + L D RTLI GG +++ +WDL
Sbjct: 222 CLGHEDFVSRMSLY-DNRTLISGGGDNHVFVWDL 254
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 396 ALAHGEVVCAVTVSSPTKYVYTGGKG-CVKVWDISQPSK 509
A A+GE + V S + T + C+++WD +QP K
Sbjct: 58 AAAYGEAIRQVAFSKDYSRMATVSEDKCLRLWDSTQPDK 96
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.7 bits (66), Expect = 0.25
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = +3
Query: 408 GEVVCAVTVSSPTKYVYTG-GKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGR 584
G ++ A S + + TG G ++WD ++ P++ + N++ V PD
Sbjct: 135 GTIISAQFSPSTSSRLVTGSGDFTARLWDCD--TQTPIATMK--GHTNWVSCVAWAPDAS 190
Query: 585 TLIVGGEASNLSIWDLASPTPXIKAELTXSXXRLLRACYQP 707
+ G + + WD +P I L ++ C+QP
Sbjct: 191 IIATGSMDNTIRFWDPKKGSP-IGDALRRHTKPIMALCWQP 230
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/93 (22%), Positives = 37/93 (39%)
Frame = +3
Query: 483 VWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPXIKAE 662
+WD Q S P++++ Q+ + PDGR + S++ +WD T A
Sbjct: 372 LWD-PQKSTKPITKMHGHQK--VVNHASFSPDGRCIATASFDSSVRLWD--GKTGKFLAT 426
Query: 663 LTXSXXRLLRACYQPRI*GLLXLWSDXXITVWD 761
L + + + L+ D + VWD
Sbjct: 427 LRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWD 459
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 30.3 bits (65), Expect = 0.34
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +3
Query: 444 TKYVYTGG--KGCVKVWDISQPSKXPVS--QLDCLQRDN--YIRSVKLLPDGRTLIVGGE 605
TK GG G +KVWD+S P+ +S Q+D ++ I +VK L DG T++
Sbjct: 166 TKDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDG-TIVSADS 224
Query: 606 ASNLSIWD 629
+ + W+
Sbjct: 225 SGAVKFWN 232
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 29.5 bits (63), Expect = 0.59
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Frame = +3
Query: 384 RQVSALAHGEVVCAVTVSSPTKYVYTG---GKGCVKVWDISQPSKXPVSQLDCLQRDNYI 554
R + L G VC + S + + T K V +W PS ++ L N +
Sbjct: 327 RLQNKLDTGSQVCNMAWSKTSNEIVTTHGFAKNQVSLW--KYPSLKNIANLTA--HTNRV 382
Query: 555 RSVKLLPDGRTLIVGGEASNLSIWDLASPTPXIKAEL 665
+ + PDG++++ G L W L + P ++ L
Sbjct: 383 LYLSMSPDGQSIVTGAGDETLRFWKLFNKKPKEESTL 419
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 29.1 bits (62), Expect = 0.78
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 313 PRDRCSLSLFPQT-P*WVLVYRGMRDKSPR*LMVRWSAR 426
P+D LFPQ+ P W+ VYR + +K+ V W R
Sbjct: 150 PKDYTMNDLFPQSFPTWISVYRNVPEKAWANRCVEWYFR 188
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 432 VSSPTKYVYTGGKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEAS 611
VS P + G + +WD+ + + PV+ + + + P+ R L GG
Sbjct: 473 VSEPCCFASVDALGNLNLWDLQKDVEAPVT--SDIPDGKPLNKIAWQPEKRNLACGGLNG 530
Query: 612 NLSIWDLASP 641
N+ I+ SP
Sbjct: 531 NVHIYKHLSP 540
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 387 QVSALAHGEVVCAVTVSSPTKYVYTGGKG-CVKVWDISQPSKXPVSQLDCLQ-RDNYIRS 560
+ + H + V ++ +KY+ + +++WD + + CL+ NY+ S
Sbjct: 89 ECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCS-----VRCLKGHTNYVSS 143
Query: 561 VKLLPDGRTLIVGGEASNLSIWDLASPT 644
+ P G L+ G + IW+L T
Sbjct: 144 IDFNPLGTLLVSGSWDETVRIWNLQDGT 171
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 603 PHPRSVSARRAAV*LTVCSCPFANN 529
P P+ +SAR AA V S PF NN
Sbjct: 334 PSPKFISARAAAAAEGVVSAPFTNN 358
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 540 RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS 638
R + +++ PDG+ +I G + IWDL S
Sbjct: 260 RSSALQTALFHPDGKRVIAAGRRKYMYIWDLES 292
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 405 HGEVVCAVTVSSPTKYVYTGG--KGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPD 578
H V VT + YV TG K C ++WD+ + V + +V + PD
Sbjct: 462 HLSDVDCVTFHPNSAYVLTGSSDKTC-RLWDVHRGHSVRVFN----GHTQPVTAVAIAPD 516
Query: 579 GRTLIVGGEASNLSIWDLAS 638
G T+ + +WD+ +
Sbjct: 517 GHTMASADSEGLIHLWDIGT 536
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 408 GEVVCAVTVSSPTKYVYTGGK-GCVKVWD 491
G+ + ++ VSS +YTGG G V+ WD
Sbjct: 281 GKHIWSLVVSSANPIIYTGGNDGSVRSWD 309
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +3
Query: 477 VKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIW 626
+ +W S S Q+D D + L PDGR L NL W
Sbjct: 416 LSIWSYS--SSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 463
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 477 VKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPT 644
V VW+ S +++ D Y+ SVK DG L VG + I+D+ S T
Sbjct: 202 VYVWNADSGSVSALAETD---ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT 254
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 543 DNYIRSVKLLPDGRTLIVGGEASNLSIW 626
+N I ++K DGR L VGG+ L IW
Sbjct: 238 NNAIWAMKFSRDGRYLAVGGQDRILRIW 265
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +3
Query: 477 VKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDL 632
+++WD SK ++ D + + +R + + DGRT++ + + +W L
Sbjct: 198 IQLWDCV--SKKRIT--DLVGHTDNVRDILISDDGRTILTASSDATIKLWSL 245
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 23 IRRETEHAY--IEARDADFGRERRGLSRGSTQGRSQASST 136
I+R +H Y ++ RDA F R ++ +RG+ + QA ++
Sbjct: 21 IKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQAKAS 60
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 393 RLVSHASVYQDPSRRLGEKGQAASVPRLI 307
+L+ HA++Y S+++ +K + S P+LI
Sbjct: 428 QLLGHANLYLTTSQQIAKKYRVVSFPKLI 456
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +3
Query: 552 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTP 647
I S+ L +G+ + + S++ W+ +P P
Sbjct: 399 INSITFLENGKRFVTTSDDSSMRFWEYGTPVP 430
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 552 IRSVKLLPDGRTLIVGGEASNLSIWD 629
I V+ PDGR L+ G ++W+
Sbjct: 84 INVVRWTPDGRRLLTGSSTGEFTLWN 109
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.2
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3
Query: 405 HG-EVVCAVTVSSPTKYVYTGGKGCVKVWDISQPSKXPVSQLDCLQRDNYIRSVKLLPDG 581
HG E++ V TK+ GG ++VWD++ K L + N IR + D
Sbjct: 55 HGHEILDLDLVYDSTKFASCGGDKFIQVWDVN-TGKVDRRLGGHLAQINTIRYNE---DS 110
Query: 582 RTLIVGGEASNLSIWDLAS 638
L G S + +WD S
Sbjct: 111 SILASGSFDSKVRLWDCRS 129
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +3
Query: 552 IRSVKLLPDGRTLIVGGEASNLSIWDLASPTPXIKAELTXSXXRLLRACYQPRI*GLLXL 731
I S+ PDG + GG + IWDL S + L +++ + P L
Sbjct: 310 IFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIM--VLDEHIRQIVAMAWSPNGYQLATS 367
Query: 732 WSDXXITVWD 761
+D + +WD
Sbjct: 368 SADDTVKIWD 377
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 9.6
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +3
Query: 348 DALMGPGIPRHARQVSALAHGEVVCAVTVSSPTKYVYTG-GKGC-VKVWDISQPSKXPVS 521
DA+ G I +H H VV A+ V + T C +KVWD SK +
Sbjct: 121 DAVSGQKIRKHK------GHAGVVNALDVLKVGSELLTSVSDDCTMKVWD--SRSKDCIK 172
Query: 522 QLDCLQRDNY-IRSVKLLPDGRTLIVGGEASNLSIWDL 632
++ + Y + +V + G + +GG + IWDL
Sbjct: 173 TIE----EKYPLTAVAIAQQGTQVFIGGIDGAIKIWDL 206
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 561 VKLLPDGRTLIVGGEASNLSIWD 629
++ PD R L +GG + S+WD
Sbjct: 200 IEFSPDNRHLAIGGADAITSLWD 222
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 9.6
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 53 EARDADFGRERRGLSRGSTQGRSQASSTTVPVP--RERGARRVRPGGVLGQXGAALRAAS 226
+A DA + R L RG R + + P +RG RR R G V G G +
Sbjct: 59 DAEDAYYEVHGRRLERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSP 118
Query: 227 SPY 235
SP+
Sbjct: 119 SPH 121
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 588 LIVGGEASNLSIWDLASPTPXIKAE 662
L GG+ +LSIW A P P + +
Sbjct: 294 LACGGQDRSLSIWSSALPRPLLSCQ 318
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +3
Query: 543 DNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPXIK 656
D I + P G + GG + +WDL P I+
Sbjct: 546 DAGINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQ 583
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,996
Number of Sequences: 5004
Number of extensions: 52934
Number of successful extensions: 239
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -