Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C17
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   123   2e-30
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   123   2e-30
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   1.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  123 bits (296), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +2

Query: 233 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 412
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 413 VRIPKEQGSPFILAW 457
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score =  111 bits (268), Expect = 6e-27
 Identities = 51/68 (75%), Positives = 52/68 (76%)
 Frame = +3

Query: 435 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 614
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 615 TSLCFVYP 638
           TSLCFVYP
Sbjct: 128 TSLCFVYP 135



 Score = 64.9 bits (151), Expect = 8e-13
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = +2

Query: 635 PLDFARTRLAADVGKGNGHGEFSGFGNWIXKXFXSXGLIGLXKXFGVA 778
           PLDFARTRLAADVGK  G  EF+G GN + K F + G+ GL + FGV+
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVS 182


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  123 bits (296), Expect = 2e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +2

Query: 233 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 412
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 413 VRIPKEQGSPFILAW 457
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score =  111 bits (268), Expect = 6e-27
 Identities = 51/68 (75%), Positives = 52/68 (76%)
 Frame = +3

Query: 435 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 614
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 615 TSLCFVYP 638
           TSLCFVYP
Sbjct: 128 TSLCFVYP 135



 Score = 64.9 bits (151), Expect = 8e-13
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = +2

Query: 635 PLDFARTRLAADVGKGNGHGEFSGFGNWIXKXFXSXGLIGLXKXFGVA 778
           PLDFARTRLAADVGK  G  EF+G GN + K F + G+ GL + FGV+
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVS 182


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 140 SGVSVSVIPHPRVPQLPPRHIHLVKIT 220
           +G   S+I  P   +LPP H H   +T
Sbjct: 86  TGFGGSIITIPPTRKLPPLHPHTAMVT 112


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 693 PWPFPLPTSAARRVRAKSRGTRSTERWLRRHHR 595
           P P  + T   R    KS+G+R+T   L ++ R
Sbjct: 29  PMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRR 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,157
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)