Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C13
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712...    31   1.0  
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315...    30   1.8  
06_03_1497 + 30585074-30586327                                         30   2.3  
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418...    29   3.1  
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979...    29   3.1  
08_01_0083 - 604175-605776                                             29   4.1  
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    28   9.5  

>04_04_0840 +
           28570642-28570809,28570919-28571025,28571137-28571238,
           28571786-28571981,28572691-28572819,28572869-28572895,
           28572896-28573090,28573182-28573292
          Length = 344

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 307 DDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDL 456
           D N   +I+ GP   GKT    SLA +L    + EA ++L+     G+D+
Sbjct: 47  DGNMPNLILSGPPGTGKTTSILSLAHELLGPSYREAVLELNASDDRGLDV 96


>04_04_1397 -
           33230416-33230742,33230852-33231007,33231130-33231543,
           33234177-33234307,33235076-33235202,33235709-33236209,
           33237624-33237935,33238690-33238719
          Length = 665

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 542 AAKRWLGS*LKXTWSKVXVSSGTWSSKDLKSTPFGR-I*CKSMLASGKCFIPKSSAREAA 366
           A KR     +K  W+K   + G W+  + K+T  GR    +++LAS + +  + S R+ A
Sbjct: 60  AGKRVTKKQVKWRWAKSRKNFGMWTWLESKATGLGRDTVSQAILASDEWWEIQESERKGA 119

Query: 365 KA 360
           KA
Sbjct: 120 KA 121


>06_03_1497 + 30585074-30586327
          Length = 417

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 SKVIIVEGPVAAGKTAFAASLADDL 390
           +KVI++ GP  AGKT  A  LA  L
Sbjct: 25  NKVIVISGPTGAGKTRLALDLAKRL 49


>07_01_0564 -
           4183441-4183530,4183683-4183752,4183972-4184063,
           4184141-4184240,4184372-4184478,4184703-4184768,
           4184879-4185013,4185653-4185808,4186113-4186262,
           4186426-4186557,4187604-4187693
          Length = 395

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 319 KVIIVEGPVAAGKTAFAASLADDLGMK 399
           + +++ GP A GKTA A  ++ +LG K
Sbjct: 4   RALLLAGPPATGKTALALGISQELGSK 30


>01_06_1273 +
           35896320-35896400,35896548-35896736,35897817-35897948,
           35898093-35898242,35898564-35898719,35899462-35899596,
           35899706-35899771,35900016-35900122,35900258-35900357,
           35900436-35900527,35901026-35901095,35901229-35901318
          Length = 455

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 319 KVIIVEGPVAAGKTAFAASLADDLGMK 399
           + +++ GP A GKTA A  ++ +LG K
Sbjct: 64  RALLLAGPPATGKTALALGISQELGSK 90


>08_01_0083 - 604175-605776
          Length = 533

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 241 FDYVNKDYTWLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLA 381
           FD +  D+ W R +  R+      + KV + EGP  AG  +    LA
Sbjct: 410 FDVLGNDFGWGRPVSVRSGGANKFDGKVTVYEGPDGAGSMSLEVCLA 456


>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
            28488490-28488630,28488876-28489071,28489207-28489379,
            28490095-28490142,28490301-28490378,28490526-28490792,
            28491689-28491842,28491928-28492064,28492459-28492536,
            28493039-28493216,28493589-28493803,28494063-28494422,
            28494497-28494973,28495561-28495665,28495838-28496020,
            28496105-28496263,28496937-28497154,28497737-28497905,
            28498262-28498568,28498699-28498826,28498902-28499060,
            28499194-28499364,28500258-28500376,28500604-28500853,
            28501007-28501759
          Length = 1950

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 511  FNQDPNHRLAANFQIMMYVARYSQYIDALAHLVQY 615
            F+ + N R AANF +   V  Y+++  A   L+QY
Sbjct: 1909 FHPEMNEREAANFMVRTCVDAYNKWTTAGYDLIQY 1943


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,313,488
Number of Sequences: 37544
Number of extensions: 357291
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)