Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C11
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...   138   9e-34
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    47   4e-06
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    31   0.15 
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   5.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   7.5  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  138 bits (334), Expect = 9e-34
 Identities = 56/95 (58%), Positives = 76/95 (80%)
 Frame = +2

Query: 371 RKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGDT 550
           R++ ++ IKPGM+M+D+   +E T R L+ EDGLK+G+ FPTG S NHCAAHYTPN GDT
Sbjct: 128 RQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGDT 187

Query: 551 TVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYD 655
           T+L+  DV+K+D G H+NGRI+D AFT+ F+P+YD
Sbjct: 188 TILKEKDVMKVDIGVHVNGRIVDSAFTMSFDPQYD 222



 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 27/55 (49%), Positives = 37/55 (67%)
 Frame = +3

Query: 660 LVKGVQXATETGIKASGVXVRLCDVGAAVQXVMESXEVELHGXMFXVKPIRNLMG 824
           L+  V+ AT  GI+ +G+  RL ++G A+Q VMES EVE++G    VK IRNL G
Sbjct: 224 LLAAVKAATNKGIEEAGIDARLNEIGEAIQEVMESYEVEINGKTHQVKSIRNLCG 278


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
 Frame = +2

Query: 374 KHIRNWIKPGMTMIDIC----EELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTPNT 541
           K +    +PG  + DIC    E L +  +++        G+AFPT  S N  AAH +P  
Sbjct: 37  KKVVELCQPGAKIYDICVRGDELLNEAIKKVYRTKDAYKGIAFPTAVSPNDMAAHLSPLK 96

Query: 542 GD---TTVLEYDDVVKIDFGTHING 607
            D      L+  DVVKI  G HI+G
Sbjct: 97  SDPEANLALKSGDVVKILLGAHIDG 121


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = +2

Query: 479 GLAFPTGCSRNHCAAHYTP-------NTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLH 637
           G+A PT    N+CA +Y P          ++  L+  DV KI  G H +G     + T+ 
Sbjct: 72  GIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALISHTIV 131

Query: 638 FNPRYDP 658
             P   P
Sbjct: 132 VTPPPQP 138


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +2

Query: 416 DICEELEKTARRLIGEDGLKAGLAFPTGCSR--NHCAAHYTPNTGDTTVLEYDDVVKIDF 589
           D   +LE+  R+    + L  GL+F T  S   N    HY+P    + +++   +   D 
Sbjct: 343 DAATKLEQFRRK----NNLFMGLSFETISSTGPNGAVIHYSPPATGSAIIDPTKIYLCDS 398

Query: 590 GTHINGRIIDCAFTLHF 640
           G        D   T HF
Sbjct: 399 GAQYKDGTTDVTRTWHF 415


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 459  VKMGSKQVWLSPQDAAATTVQRII 530
            V  G   + L PQD A TT++RI+
Sbjct: 1241 VHSGDATLVLPPQDLAPTTIERIV 1264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,788
Number of Sequences: 5004
Number of extensions: 45681
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)