Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_C11
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 151 9e-37
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 147 8e-36
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 31 1.1
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 31 1.5
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 28 7.9
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 151 bits (365), Expect = 9e-37
Identities = 64/95 (67%), Positives = 81/95 (85%)
Frame = +2
Query: 371 RKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGDT 550
RKH+R+ +KPGM MID+CE LE R+LI E+GL+AG+AFPTGCS N AAH+TPN+GD
Sbjct: 254 RKHMRSILKPGMLMIDLCETLENMVRKLIKENGLQAGIAFPTGCSLNWVAAHWTPNSGDK 313
Query: 551 TVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYD 655
TVL+YDDV+K+DFGTHI+G I+DCAFT+ FNP +D
Sbjct: 314 TVLQYDDVMKLDFGTHIDGYIVDCAFTVAFNPMFD 348
Score = 69.7 bits (163), Expect = 3e-12
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +3
Query: 660 LVKGVQXATETGIKASGVXVRLCDVGAAVQXVMESXEVELHGXMFXVKPIRNLMG 824
L++ + AT TG+K +G+ RLCDVGAA+Q VMES EVE++G +F +K +RNL G
Sbjct: 350 LLQASKDATNTGVKEAGIDARLCDVGAAIQEVMESYEVEINGKVFQIKSVRNLNG 404
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 147 bits (357), Expect = 8e-36
Identities = 64/96 (66%), Positives = 80/96 (83%)
Frame = +2
Query: 371 RKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGDT 550
RK++R+ +KPGM MID+CE LE R+LI E+GL+AG+AFPTGCS N AAH+TPN GD
Sbjct: 198 RKYMRSILKPGMLMIDLCETLENMVRKLIKENGLEAGIAFPTGCSLNCVAAHWTPNGGDK 257
Query: 551 TVLEYDDVVKIDFGTHINGRIIDCAFTLHFNPRYDP 658
TVL+YDDV+K+DFGTHING I+D AFT+ FNP +DP
Sbjct: 258 TVLQYDDVMKLDFGTHINGYIVDSAFTVAFNPMFDP 293
Score = 70.9 bits (166), Expect = 1e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +3
Query: 657 PLVKGVQXATETGIKASGVXVRLCDVGAAVQXVMESXEVELHGXMFXVKPIRNLMG 824
PL++ + AT G+K +G+ RLCDVGAA+Q VMES EVE++G +F VK +RNL G
Sbjct: 293 PLLQASRDATNAGVKEAGIDARLCDVGAAIQEVMESYEVEINGKVFQVKSVRNLNG 348
>11_05_0099 -
19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +2
Query: 479 GLAFPTGCS--RNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRIIDCAFTLHF 640
GL+FPT S N HY+P L+ D + D G D T+HF
Sbjct: 456 GLSFPTISSVGPNAAVIHYSPEASSCAELDADKIYLCDSGAQYLDGTTDITRTVHF 511
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +2
Query: 392 IKPGMTMIDICEELEKTARRLIGEDGLKAG----LAFPTG-C-SRNHCAAHYTPNTGDTT 553
++PG+T +E++K ++I ++G FP C S N C H P D+
Sbjct: 130 VEPGITT----DEIDKAVHQMIVDNGAYPSPLGYCGFPKSVCTSVNECICHGIP---DSR 182
Query: 554 VLEYDDVVKIDFGTHING 607
LE D++ ID ++NG
Sbjct: 183 PLEDGDIINIDVTVYLNG 200
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +2
Query: 392 IKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTG-C-SRNHCAAHYTPNTGDTTVLEY 565
IKP +T +I E+ FP C S N C H P D+T L+
Sbjct: 123 IKPSVTTNEIDREVHNMIIEAGAYPSQLGYGGFPKSICTSLNECVCHGVP---DSTQLQT 179
Query: 566 DDVVKIDFGTHING 607
D++ +D +NG
Sbjct: 180 GDIMNVDVNVFLNG 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,668,296
Number of Sequences: 37544
Number of extensions: 321540
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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