Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_C09
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 176 3e-45
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 171 1e-43
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.060
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.079
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 0.97
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 2.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.2
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 5.2
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 9.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 176 bits (428), Expect = 3e-45
Identities = 80/121 (66%), Positives = 98/121 (80%)
Frame = +3
Query: 93 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 272
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 273 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNXIQAXFREPRLLIVLD 452
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 453 P 455
P
Sbjct: 130 P 130
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 171 bits (415), Expect = 1e-43
Identities = 75/125 (60%), Positives = 99/125 (79%)
Frame = +3
Query: 81 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 260
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 261 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNXIQAXFREPRLL 440
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 441 IVLDP 455
+V DP
Sbjct: 125 VVTDP 129
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.060
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 625 PPXXXGXGGXXXPPPPPPPXXXGGG 699
PP G G PPPPPPP G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 32.3 bits (70), Expect = 0.079
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 725 PPPPXXGXXPPPXXXGGGGGGGXXXPPXP 639
PP P G PPP G G G PP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 31.9 bits (69), Expect = 0.10
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 604 GGXXGXSPPXXXGXGGXXXPPPPPPPXXXGG 696
GG PP G PPPPPP GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 625 PPXXXGXGGXXXPPPPPPPXXXGGG 699
PP G PPPPPPP GG
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +1
Query: 625 PPXXXGXGGXXXPPPPPPPXXXGGGXXP 708
PP GG PPPPPPP G G P
Sbjct: 752 PPPAPIMGGP--PPPPPPPGVAGAGPPP 777
Score = 29.5 bits (63), Expect = 0.56
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 726 PPPPXXGXXXPPXXXXGGGGGGXXXPPXP 640
PP P G PP G G G PP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 725 PPPPXXGXXPPPXXXGGGGGGGXXXPPXP 639
P P G PPP G G G PP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +2
Query: 593 PXKXXGXXXXPPXXXXGXGGXXXPPPPPPXXXXGG 697
P G PP G PPPPPP G
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -1
Query: 731 GXPPPPXXGXXPPPXXXGGGGGGGXXXPPXPXXXGGEXPXXP 606
G PPPP PPP G G PP GG P
Sbjct: 759 GGPPPP-----PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 624 PPXXPXXXGGXXXPPPPPPXXXXGGXXP 707
PP P G PPPPPP G P
Sbjct: 752 PPPAPIMGG--PPPPPPPPGVAGAGPPP 777
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Frame = -1
Query: 725 PPP----PXXGXXPPPXXXGGGGGGGXXXPPXPXXXGGEXPXXPP 603
PPP P P P GG PP P G P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.079
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 625 PPXXXGXGGXXXPPPPPPPXXXGGGXXP 708
PP G PPPPPPP G P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIP 352
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 661 PPPPPPPXXXGGGXXPXXGG 720
PPPPPPP G P G
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG 330
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 623 PPXXXXGXGGXXXPPPPPPXXXXGGXXXPXXGGGGAP 733
PP PPPPPP G G AP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/52 (25%), Positives = 13/52 (25%)
Frame = -3
Query: 726 PPPPXXGXXXPPXXXXGGGGGGXXXPPXPXXXXGGXXXXPXXFXGXXPPXXP 571
PPP PP PP P G P PP P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.97
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 216 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 392
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 646 GGXXXPPPPPPP 681
GG PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 622 SPPXXXGXGGXXXPPPPPPP 681
+P G PPPPPPP
Sbjct: 294 APSSGDSANGGLPPPPPPPP 313
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 625 PPXXXGXGGXXXPPPPPPP 681
PP G PPPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = -1
Query: 482 GSERXEVXXRVQNNQETRFPEXSLDXVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**D 303
GSE E R + E F + +S + W T + + G+RG ++ EGP
Sbjct: 168 GSEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SA 224
Query: 302 DEHISGVLDG 273
D H SGV G
Sbjct: 225 DLH-SGVFGG 233
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 9.1
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -3
Query: 300 RTHQRGSRWLRQHEQPEQVFPRYDA 226
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 680 GGGGGGGXXXPPXPXXXGG 624
GG GGG PP P GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGG 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,136
Number of Sequences: 5004
Number of extensions: 57933
Number of successful extensions: 306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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