Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_C08
(1166 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.005
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.008
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 6.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.1 bits (82), Expect = 0.005
Identities = 32/133 (24%), Positives = 35/133 (26%), Gaps = 1/133 (0%)
Frame = +3
Query: 636 PPPPHSGXXGXXXXGXXGRXGXRXPPXXPXXPPXXGXXGGAPPSXXAXSKGPVXXXXXAX 815
PPPP G G PP P G P A P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 816 RAPPPXXXXXGXPPPXRGWXPXXVXXALSGQXPXXGXPPESLXPWXXXPAXXPLXAPPXT 995
R PPP P P + + P G + P P P APP
Sbjct: 374 RQPPPLSSSRAVSNPPA--PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSL 431
Query: 996 PXXXAPR-XXGAP 1031
P P GAP
Sbjct: 432 PPSAPPSLPMGAP 444
Score = 35.9 bits (79), Expect = 0.011
Identities = 53/226 (23%), Positives = 58/226 (25%), Gaps = 11/226 (4%)
Frame = +1
Query: 385 APXPPPAXTXXXXXGXSXSSXPPGXPXXGXXXSXPXGXGPPSXLGXPXPXXXXSRXXLGA 564
AP PPP + SS P P S S P P S L A
Sbjct: 250 APAPPPIPPPS---NGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAA 306
Query: 565 --------PTPARSGXXXXPXGGXXXXXSXXXPPPLTRXXXXXAPXVXXAGXXXAXXXXX 720
P P+R P G S PPP R + + G
Sbjct: 307 NKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP---- 362
Query: 721 PXXPPGXXSXGXRPPPXXQXXKXQXSPXXXRAARPXPXXXXXGXPPXPGXGXPXXXRXXC 900
P P S G +PPP P P P P P G
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPA------PPPAIPGRSAPALPPLGNASRTST-- 414
Query: 901 QXXPXAGAXPQSPXXLGXXXPPPXPXEXP---PAPPXXEPPAXXXP 1029
P P P PP P P PA P P A P
Sbjct: 415 ---PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
Score = 34.7 bits (76), Expect = 0.025
Identities = 49/217 (22%), Positives = 56/217 (25%), Gaps = 3/217 (1%)
Frame = +1
Query: 388 PXPPPAX--TXXXXXGXSXSSXPPGXPXXGXXXSXPXGXGPPSXLGXPXPXXXXSRXXLG 561
P PPP+ + PP P P G G + P P S
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350
Query: 562 APTPARSGXXXXPXGGXXXXXSXXXPPPLTRXXXXXAPXVXXAGXXXAXXXXXPXXPPGX 741
P P + P + PPPL+ P P P G
Sbjct: 351 IPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP--PLGN 408
Query: 742 XSXGXRPP-PXXQXXKXQXSPXXXRAARPXPXXXXXGXPPXPGXGXPXXXRXXCQXXPXA 918
S PP P P +A P PP P P A
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP---------------PSA 453
Query: 919 GAXPQSPXXLGXXXPPPXPXEXPPAPPXXEPPAXXXP 1029
P P G PP P PAPP PA P
Sbjct: 454 PIAP--PLPAGMPAAPPLPPA-APAPPPAPAPAPAAP 487
Score = 34.7 bits (76), Expect = 0.025
Identities = 42/169 (24%), Positives = 47/169 (27%), Gaps = 13/169 (7%)
Frame = +3
Query: 570 PGSXRXGXXSXG-GRXXQXIXXXPPPPHSGXXGXXXXGXXGRXGXRXPPXXPXX------ 728
P G G G + PPPP S G GR PP
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376
Query: 729 PPXXGXXG-----GAPPSXXAXSKGPVXXXXXAXR-APPPXXXXXGXPPPXRGWXPXXVX 890
PP PP+ S + A R + PP PP P
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436
Query: 891 XALSGQXPXXGXPPESLXPWXXXPAXXPLXAPPXTPXXXAPRXXGAPXP 1037
+L P P S PA P APP P AP AP P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPA-APPLPPAAPAPPPAPAPAP 484
Score = 33.9 bits (74), Expect = 0.044
Identities = 33/122 (27%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Frame = +2
Query: 689 PXGXXPPXXXSXXXPXXXXPRGXAPLPXGXVXRXSXXRXARXPRAPXRPXXL-----RGX 853
P PP + P PR AP+ + P + L R
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312
Query: 854 PPXP----GXGXPS-GXGGXVRXXPXXGPPPRVLXSLGXXSRXPPPXSXPXHPPPXSPPX 1018
PP P G P G G P PPPR + G P S P PPP S P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS-NAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 1019 XG 1024
G
Sbjct: 372 TG 373
Score = 23.4 bits (48), Expect(2) = 3.0
Identities = 10/29 (34%), Positives = 10/29 (34%)
Frame = -3
Query: 234 PPPPPPXXGCFXXXPXXXGGGGRKPXVNP 148
PPPPPP P G P P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 22.6 bits (46), Expect(2) = 3.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 243 KNXPPPPPP 217
K PPPPPP
Sbjct: 309 KRPPPPPPP 317
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.008
Identities = 31/124 (25%), Positives = 36/124 (29%), Gaps = 3/124 (2%)
Frame = +2
Query: 674 PRSXGPXGXXPPXXXSXXXPXXXXPRGXAPLPXGXVXRXSXXRXARXPRAPXRPXXLRGX 853
P P G P S P P G P+P V + P P +P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP-KPSVAAPP 1170
Query: 854 PPXPGXGXP---SGXGGXVRXXPXXGPPPRVLXSLGXXSRXPPPXSXPXHPPPXSPPXXG 1024
P P G P G P PP S+G PP + P P P
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Query: 1025 XPXA 1036
P A
Sbjct: 1231 VPTA 1234
Score = 29.1 bits (62), Expect = 1.2
Identities = 27/104 (25%), Positives = 30/104 (28%), Gaps = 1/104 (0%)
Frame = +3
Query: 729 PPXXGXXGGAPPSXXAXSKGPVXXXXXAXRAPPPXXXXXGXPPPXRGWXPXXVXXALSGQ 908
PP G P + + PV A P P P P G P V +G
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP--VPKPAAGV 1188
Query: 909 XPXXGXPPESLXPWXXXPAXXPLXAPPXT-PXXXAPRXXGAPXP 1037
P PP P P PP T P P P P
Sbjct: 1189 PPV--PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 27.5 bits (58), Expect = 3.8
Identities = 45/223 (20%), Positives = 53/223 (23%), Gaps = 11/223 (4%)
Frame = +1
Query: 394 PPPAXTXXXXXGXSXSSXPPGXPXXGXXXSXPXGXGPPSXLGXPXPXXXXSRXXLGAPTP 573
PPP S +S PP S P P + L P S P P
Sbjct: 970 PPPLPVSNILS--SPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLP 1027
Query: 574 -ARSGXXXXPXGGXXXXXSXXXPP-PLTRXXXXXAPXVXXAGXXXAXXXXXPXXPPGXXS 747
A + P PP P + AP A P P +
Sbjct: 1028 SADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087
Query: 748 XGXRPP--------PXXQXXKXQXSPXXXRAARPXPXXXXXGXPPXP-GXGXPXXXRXXC 900
PP P P + P PP P G P +
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Query: 901 QXXPXAGAXPQSPXXLGXXXPPPXPXEXPPAPPXXEPPAXXXP 1029
P P PP P PP +P A P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Score = 26.2 bits (55), Expect = 8.7
Identities = 43/229 (18%), Positives = 56/229 (24%), Gaps = 8/229 (3%)
Frame = +1
Query: 373 GGXXAPXPPPAXTXXXXXGXSXSSXPPGXPXXGXXXSXPXGXGPPSXLGXPXPXXXXSRX 552
G AP P PA + + S PP P P PS P P +
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAPP-VPAPSGIPPVPK----PSVAAPPVPKPSVAVP 1112
Query: 553 XLGAPTPARSGXXXXPXGGXXXXXSXXXPPPLTRXXXXXAPXVXXAGXXXAXXXXXPXXP 732
+ P P+ + P PP+ + P +G P
Sbjct: 1113 PV--PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Query: 733 PGXXSXGXRP--------PPXXQXXKXQXSPXXXRAARPXPXXXXXGXPPXPGXGXPXXX 888
S G P PP + P P P P P G P
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Query: 889 RXXCQXXPXAGAXPQSPXXLGXXXPPPXPXEXPPAPPXXEPPAXXXPXR 1035
+ P ++P P P P A P R
Sbjct: 1231 VPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPAR 1279
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = +2
Query: 890 GGXVRXXPXXGPPPRVLXS----LGXXSRXPPPXSXPXHPPPXSPPXXGXP 1030
GG P PP R + + + PPP S P PPP +PP P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVP--PPPSAPPMPAGP 1727
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = +1
Query: 928 PQS--PXXLGXXXPPPXPXEXPPAPPXXEPPA 1017
PQS P + PPP P PP P PA
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPA 1725
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +2
Query: 923 PPPRVLXSLGXXSRXPPPXSXPXHPPPXSPPXXGXPXA 1036
PP V + S PP S H P +PP P A
Sbjct: 1505 PPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSA 1542
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 233 PPPPPPXXGVFXXXPP 186
PPPPPP GV PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 928 PQSPXXLGXXXPPPXPXEXPPAPPXXEPP 1014
P +P G PPP P PP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 964 PPXPXEXPPAPPXXEPPAXXXP 1029
PP PP PP EPP+ P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 6.6
Identities = 24/95 (25%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Frame = +1
Query: 736 GXXSXGXRPPPXXQXXKXQXSPXXXRAARPXPXXXXXGXPPXPGXGXPXXXRXXCQXXPX 915
G S PP Q +A P P PP P P + P
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIP----PPSPASAPPIPSK--APPIPS 169
Query: 916 AGAXPQSPXXLGXXXP--PPXPXEXPPAPPXXEPP 1014
+ P P P P P PP PP PP
Sbjct: 170 SLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 8.7
Identities = 29/122 (23%), Positives = 34/122 (27%), Gaps = 1/122 (0%)
Frame = +2
Query: 638 PPPSLGGXGXXXPRSXGPXGXXPPXXXSXXXPXXXXPRGXAPLPXGXVXRXSXXRXARXP 817
PPPS P + P PP P A P P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP-PAVEDQAADANEPDDYYSSGRAVSPEIPP 225
Query: 818 R-APXRPXXLRGXPPXPGXGXPSGXGGXVRXXPXXGPPPRVLXSLGXXSRXPPPXSXPXH 994
P + L PP P P P P R + +LG PPP + P
Sbjct: 226 TYTPKQADPLPAPPPPPPPTLPP-QSTNTSQLPM---PSRNVNNLGSQVNIPPPPATPSQ 281
Query: 995 PP 1000
PP
Sbjct: 282 PP 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.148 0.502
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,666
Number of Sequences: 5004
Number of extensions: 40691
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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