Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C08
         (1166 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +1

Query: 901  QXXPXAGAXPQSPXXLGXXXPPPXPXEXPPAPPXXEPP 1014
            Q  P      Q P   G   P P P + P AP    PP
Sbjct: 4    QKQPIITQQSQQPSS-GAPGPQPSPHQSPQAPQRGSPP 40



 Score = 24.6 bits (51), Expect = 1.7
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +2

Query: 878  PSGXGGXVRXXPXXGPPPRVLXSLGXXSRXPPPXSXPXHPPPXSP 1012
            PS      +  P   P      S    S+ PPP   P  PP  +P
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 6.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 845 RGXPPXPGXGXPSG 886
           RG PP P  G P G
Sbjct: 36  RGSPPNPSQGPPPG 49


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 234  PPPPPPXXG 208
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 22.6 bits (46), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 233  PPPPPPXXG 207
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 946  LGXXXPPPXPXEXPPAPPXXEP 1011
            LG    PP P   PP P    P
Sbjct: 332  LGDSDTPPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.148    0.502 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,591
Number of Sequences: 438
Number of extensions: 9155
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39644829
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)