Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C07
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.38 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   4.6  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 230 VRVHRANTGRSSNELDRQTTELERR 304
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/62 (30%), Positives = 20/62 (32%)
 Frame = +1

Query: 439 PPXLXPXGVWPXPXXRXAXXXGPPPPXGXXXGPLPXXXXXPGAAXRAPPXXPXXGGPXPX 618
           PP   P  + P P    A    P PP     G  P     PG A   PP  P        
Sbjct: 732 PPPPPPAVIVPTP----APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787

Query: 619 GG 624
           GG
Sbjct: 788 GG 789


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
 Frame = +1

Query: 439  PPXLXPXGVWPXPXXRXAXXXGPPPPXGXXXGPLP-XXXXXPGAAXRAPPXXPXXGGP 609
            PP   P G+ P P    A    P P       P P      P  +  APP     G P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
 Frame = +1

Query: 433  ARPPXLXPXGVWPXPXXRXAXXXGPPPPXGXXXGPLPXXXXXP-GAAXRAPP-XXPXXGG 606
            A PP   P G  P P    A    P P  G    P P     P      APP   P  G 
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV 1207

Query: 607  P 609
            P
Sbjct: 1208 P 1208


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 154 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNQ 56
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,317
Number of Sequences: 5004
Number of extensions: 42550
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)