Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_C06
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 32 0.64
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 32 0.64
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 1.5
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 30 2.0
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 2.0
05_01_0120 - 828834-831143 30 2.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.5
07_03_1136 + 24218601-24218734,24218769-24219906 29 6.0
05_01_0142 - 940421-940701,941262-941574 29 6.0
08_02_0813 + 21459776-21461128 28 7.9
06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134... 28 7.9
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.9
03_02_0111 + 5688649-5688942 28 7.9
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 7.9
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.9
02_01_0054 - 404464-405152,406087-406618 28 7.9
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 28 7.9
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 7.9
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 701 NVFSGXXPPGTXPXGAGAXXPPXGAPGXGPP 793
N S PP P GA PP G PG PP
Sbjct: 608 NTASALPPPPPRPPGAPPPPPPPGKPGGPPP 638
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 701 NVFSGXXPPGTXPXGAGAXXPPXGAPGXGPP 793
N S PP P GA PP G PG PP
Sbjct: 913 NTASALSPPPPRPPGAPPPPPPPGKPGGPPP 943
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 396 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 548
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +3
Query: 102 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 281
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 282 LDRQTTELERRGSGAAALGW 341
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 722 PPGTXPXGAGAXXPPXGAPGXGPPXG 799
PP P G A PP G P PP G
Sbjct: 505 PPNDPPYGRPAIDPPYGRPAIDPPYG 530
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 427 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSNSVVCRSNS 278
T + S GGCS + PP AFRG+ + P+ + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>05_01_0120 - 828834-831143
Length = 769
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 794 GGGXXXGXPXAEXXPPPPXXXXRGGXSR 711
GGG G A PPPP RGG R
Sbjct: 42 GGGGGAGAGQARRIPPPPPLTPRGGKGR 69
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 722 PPGTXPXGAGAXXPPXGAPGXGPPXGXXXXRXXXPP 829
PP P A PP PG PP G PP
Sbjct: 350 PPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPP 385
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 713 GXXPPGTXPXGAGAXXPPXGAPGXGPP 793
G PG P G G PP G G GPP
Sbjct: 94 GGGAPG--PLGGGGARPPGGGGGGGPP 118
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Frame = +2
Query: 722 PPGTXPXGAGAXXPPXGA----PGXGPPXGXXXXRXXXPP 829
PPG P GA PP GA PG PP PP
Sbjct: 43 PPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPP 82
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 311 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 490
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 491 QL 496
+L
Sbjct: 289 EL 290
>06_03_1368 -
29612463-29612638,29613135-29613222,29613334-29613474,
29613561-29613595,29613990-29614054,29614286-29614335,
29614417-29614521,29614608-29614688,29614771-29614852,
29614941-29614995,29615111-29616164,29617202-29617289,
29617379-29617485,29617568-29617686,29617784-29617994
Length = 818
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 722 PPGTXPXGAGAXXPPXGAPGXGPP 793
PP P GA A PP P PP
Sbjct: 9 PPPAPPPGAAAADPPESTPAPPPP 32
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 75 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 215
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 297 TELERRGSGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 470
T L + AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 364 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 278
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 7.9
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -1
Query: 348 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 190
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 189 GVGGGVPIVRCEERVDHEG 133
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 798 PXGGPXPGAPXGGXXAPAPXGXVPGGXXPEKTXGN 694
P GG G P GG P G PGG P GN
Sbjct: 546 PGGGFPGGMPGGGFPGGMP-GGFPGGAMPGGVPGN 579
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 308 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 487
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 488 MQLDN 502
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,896,240
Number of Sequences: 37544
Number of extensions: 564314
Number of successful extensions: 1877
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -