Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C05
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.26 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.3  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    26   5.6  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   9.9  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   9.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 235 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 336
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 313 FPCVPTQSFVDPIHLKICQYPHGGL 239
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 413 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 550
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 720 GRVSXXDNXGXXPTGSFH 667
           G+++  D  G  PTGSFH
Sbjct: 142 GKIAYSDEFGGKPTGSFH 159


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -3

Query: 684 PTGSFHVXXVLAXHRXGQXPSHPHAXEVGHTVYSCCQSRKSISSL 550
           PTGS +       H+    PS P    +GH      ++  S+ S+
Sbjct: 191 PTGSVNSNMPFQFHQSSSVPSTPSEVAMGHNFCPMSRNDPSLQSI 235


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 624 SHPHAXEVGHTVYSCCQSRKSISSLLCILE 535
           +HPH       + SCC    +I  LL +++
Sbjct: 175 AHPHQLAYAALLISCCNDENTIPKLLDLIK 204


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 595 YXIFLLSIXEIHFVTIVHPRTELERASLHVVGPIV*LHRNWSANV 461
           + ++LL    IH  T + P+  L    + +V PI+  +  W   +
Sbjct: 226 FAVYLLKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRI 270


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +2

Query: 386  ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 565
            ATT GDYA + ++  N  ++     D S  ++   D +   + T   K  S +  S E D
Sbjct: 1367 ATTTGDYAEKLKLLRNQDIN-----DFSLGLASYSDIFDKPLVTLPVKKSSAVDES-END 1420

Query: 566  FRD*QQE 586
            F D   E
Sbjct: 1421 FYDRNDE 1427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,288
Number of Sequences: 5004
Number of extensions: 56872
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)