Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C03
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    30   1.9  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    29   4.3  
05_03_0179 - 9257066-9258946                                           28   7.5  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   7.5  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   7.5  
01_06_1147 + 34892415-34893702,34894051-34894676                       28   7.5  
10_07_0095 - 12824101-12824463                                         28   9.9  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    28   9.9  

>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 235 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 351
           V+ H  +  R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 337 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 173
           H P AAA  P VP++    P  L +     GG GL   S S +  G  + D G+ G
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>05_03_0179 - 9257066-9258946
          Length = 626

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 443 RRSRYXIHGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIP 309
           +++R   HGR        L+ + A P     +VP TP KC +P+P
Sbjct: 120 KKARGATHGRNIYDGGCLLEAQHAQPCSKDGAVP-TPTKCSTPVP 163


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 419 GRGERSPRRWLQPRLAVPRQASTSVPRTP 333
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 364 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 197
           ++PP     H   + AP P +P+ S   P++  +   PH        S +QM  Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606


>01_06_1147 + 34892415-34893702,34894051-34894676
          Length = 637

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 339 PRNACGGLTWYC*XRLQPPPGTTLSAPVYLITAPSPG 449
           P N+  G  + C   LQP PGT  S P    T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245


>10_07_0095 - 12824101-12824463
          Length = 120

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 461 PXALSRRRSRYXIHGRGERSPRRWLQPRLAVPRQAS 354
           P A   RR    +HG+G R PRR L     V R  S
Sbjct: 5   PGAQHGRRRPQSLHGQGRRRPRRGLAGESTVLRARS 40


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 289 FVDPIHLKICQYPHGGLGLTNVSMSQMQGQVDYDFGVRGETPDRTLRGASRS*GTVMLRF 110
           ++  +H    + P G  G+ N+S+  +    D +    G +PD  L G   +   ++ R 
Sbjct: 6   YLQSLHFNCIRLPDGA-GVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 109 RILPH 95
            I PH
Sbjct: 65  EIYPH 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,399,729
Number of Sequences: 37544
Number of extensions: 394364
Number of successful extensions: 1196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)