Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_C03
(798 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 39 6e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 39 6e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 35 8e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 34 0.001
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 34 0.001
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 34 0.002
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 34 0.002
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 33 0.002
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.004
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 32 0.005
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.016
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.27
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.6
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 38.7 bits (86), Expect = 6e-05
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Frame = +2
Query: 137 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 316
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 317 -GCSTWLVSSERLWRPD-XXXXXXXXXXXGDYALRARVSXNGSVSWI 451
G ++ +LW+PD G Y V+ NGS ++
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 38.7 bits (86), Expect = 6e-05
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Frame = +2
Query: 137 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 316
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 317 -GCSTWLVSSERLWRPD-XXXXXXXXXXXGDYALRARVSXNGSVSWI 451
G ++ +LW+PD G Y V+ NGS ++
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 224 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXX 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSXNGSVSWI 451
G Y V+ NGS ++
Sbjct: 85 GTYQTSVVVTHNGSCLYV 102
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 35.9 bits (79), Expect = 4e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 224 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXX 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSXNGSVSWI 451
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 35.9 bits (79), Expect = 4e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 224 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXX 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSXNGSVSWI 451
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 35.9 bits (79), Expect = 4e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 224 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXX 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSXNGSVSWI 451
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 35.9 bits (79), Expect = 4e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 224 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXX 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSXNGSVSWI 451
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 35.9 bits (79), Expect = 4e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 224 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXX 397
++ E + A L++ W+D L WN E+ G ++ +LW+PD
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 398 GDYALRARVSXNGSVSWI 451
G Y V+ +GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 35.1 bits (77), Expect = 8e-04
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = +2
Query: 188 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 364
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 365 XXXXXXXXXXXGDYALRAR--VSXNGSVSWI 451
+ VS G V W+
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 34.3 bits (75), Expect = 0.001
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 266 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDXXXXXXXXXXXG-DYALRARVSXNGS 439
++ +W D +L W+ E+G L V S+ +WRPD A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 440 VSW 448
V W
Sbjct: 137 VEW 139
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 34.3 bits (75), Expect = 0.001
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Frame = +2
Query: 188 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 355
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 356 RPDXXXXXXXXXXXGDYAL-RARVSXNGSVSW 448
PD G + +A + G V W
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.9 bits (74), Expect = 0.002
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 194 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 364
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPD 119
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 33.9 bits (74), Expect = 0.002
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 266 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDXXXXXXXXXXXGDYAL----RARVSX 430
++ W D +L WN E+G L V SE +W PD G+Y + +A +
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPD---IVLYNNADGNYEVTLMTKATLKY 142
Query: 431 NGSVSW 448
G VSW
Sbjct: 143 TGDVSW 148
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.5 bits (73), Expect = 0.002
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = +2
Query: 185 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 358
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 359 PDXXXXXXXXXXXGDYALRAR----VSXNGSVSWI 451
PD G+Y +R + + NG V W+
Sbjct: 111 PD---IVLFNNADGNYEVRYKSNVLIYPNGDVLWV 142
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.1 bits (72), Expect = 0.003
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +2
Query: 185 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 358
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 359 PDXXXXXXXXXXXG-DYALRARVSXNGSVSW 448
PD A +A + G V W
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 33.1 bits (72), Expect = 0.003
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 155 RTIGSLPPXSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCST 328
R +G+ + + L L L N++ T + ++ W D +L WN ++ G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 329 WLVSSERLWRPD 364
V SE +W PD
Sbjct: 95 LHVPSEHIWLPD 106
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 32.7 bits (71), Expect = 0.004
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 185 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 358
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 359 PD 364
PD
Sbjct: 113 PD 114
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 32.3 bits (70), Expect = 0.005
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +2
Query: 152 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTW 331
+R +G+ + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 332 L-VSSERLWRPD-XXXXXXXXXXXGDYALRARVSXNGSVSWI 451
L + RLW+PD G Y V NG+ ++
Sbjct: 98 LRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYV 139
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 30.7 bits (66), Expect = 0.016
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 227 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPD 364
I E + T + + +W+D+RL++ G+ + + R+W+PD
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 26.6 bits (56), Expect = 0.27
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 269 QMNWIDKRLSWNAGEWGCSTWLVSSERLWRPD 364
+ +W D RLS+ S + ER+WRPD
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPD 121
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 331 PSAAAPFPCVPTQS 290
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,869
Number of Sequences: 438
Number of extensions: 3426
Number of successful extensions: 41
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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