Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_C02
         (1172 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       33   0.33 
09_02_0603 - 11150739-11150746,11150791-11151340                       32   1.0  
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     31   2.3  
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    29   5.4  
07_01_0862 - 7172083-7172931                                           29   5.4  
11_06_0610 - 25449085-25453284                                         29   7.1  
01_06_1377 + 36764461-36765339                                         29   7.1  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 26/72 (36%), Positives = 27/72 (37%)
 Frame = -2

Query: 649 PXAGPPXGPNPXKFLGXLIFSKTPXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXGFFP 470
           P A  P  P P K       +  P P KG     P   KG    PPPK   PPP     P
Sbjct: 321 PAAAAPPPPPPPKA------APPPPPPKGPPP--PPPAKGPPPPPPPKGPSPPPP----P 368

Query: 469 PPXGXXXXXXPP 434
           PP G      PP
Sbjct: 369 PPGGKKGGPPPP 380


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 547 PQKXKGXFFXPPPKXRXPPPXXGFFPPP 464
           P    G FF PPP+ R PPP      PP
Sbjct: 63  PPPPLGSFFVPPPQSRVPPPPPQLGVPP 90


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
 Frame = -2

Query: 649 PXAGPPXGPNPXKFLGXLIFSKTPXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXG--- 479
           P   PP  P    +         P P  G +A  P      +  PPP    PPP  G   
Sbjct: 401 PPTYPPADPAAGGYTSQPYMGAPPPPPPGSYAPVP------WGQPPPYASYPPPPPGSSM 454

Query: 478 FFPPPXGXXXXXXPP 434
           + PPP        PP
Sbjct: 455 YNPPPPAPGQATPPP 469


>12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,
            6800407-6800454,6801740-6801836,6801922-6802001,
            6802099-6802170,6802335-6802429,6802853-6802934,
            6805476-6805853
          Length = 478

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 1066 PPPXV-FF*KXPPPKKXXXFXPPPP 995
            PPP +  F   PPP +   F PPPP
Sbjct: 47   PPPVIRVFAAAPPPPRAAFFAPPPP 71


>07_01_0862 - 7172083-7172931
          Length = 282

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 772 LFKFPTLLXXKXPILKF-IXFPNPQKPF*ISKGLXXKKKXIXPXAGPPXGPNPXK 611
           L  FP  L  +   + F +  P  +KP      L  KKK + P + PP  P P K
Sbjct: 143 LLLFPPPLPPRKKAMLFPLPLPPRKKPLLYPPPLPPKKKPLPPPSPPPQPPLPEK 197


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
 Frame = -2

Query: 649  PXAGPPXG---PNPXKFLGXLIFSKTPXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXG 479
            P + PP     P P +        K+P P  G     P   K     P      PPP   
Sbjct: 796  PTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKS 855

Query: 478  FFPPPXGXXXXXXPP 434
              PPP        PP
Sbjct: 856  SSPPPEAHVSSPPPP 870


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -2

Query: 517 PPPKXRXPPPXXG--FFPPPXGXXXXXXPP 434
           PPP+ + PPP     +FPPP        PP
Sbjct: 156 PPPEPQYPPPSSSPYYFPPPPPPAYSAPPP 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,043,387
Number of Sequences: 37544
Number of extensions: 197258
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3584899172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)