Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_C02
(1172 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 38 0.010
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 38 0.010
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 38 0.010
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 2.7
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 2.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 3.6
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.8
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 38.3 bits (85), Expect = 0.010
Identities = 24/72 (33%), Positives = 27/72 (37%)
Frame = -2
Query: 649 PXAGPPXGPNPXKFLGXLIFSKTPXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXGFFP 470
P AG P P P K L S +P P + P + PPP PPP G P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP--PPPPTGSPPPPPAGGSP 289
Query: 469 PPXGXXXXXXPP 434
PP PP
Sbjct: 290 PPPRAGSPPPPP 301
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 514 PPKXRXPPPXXGFFPPPXGXXXXXXPP 434
PP PPP G PPP G PP
Sbjct: 307 PPTGSLPPPQAGGSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 38.3 bits (85), Expect = 0.010
Identities = 24/72 (33%), Positives = 27/72 (37%)
Frame = -2
Query: 649 PXAGPPXGPNPXKFLGXLIFSKTPXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXGFFP 470
P AG P P P K L S +P P + P + PPP PPP G P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP--PPPPTGSPPPPPAGGSP 310
Query: 469 PPXGXXXXXXPP 434
PP PP
Sbjct: 311 PPPRAGSPPPPP 322
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 514 PPKXRXPPPXXGFFPPPXGXXXXXXPP 434
PP PPP G PPP G PP
Sbjct: 328 PPTGSLPPPQAGGSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 38.3 bits (85), Expect = 0.010
Identities = 24/72 (33%), Positives = 27/72 (37%)
Frame = -2
Query: 649 PXAGPPXGPNPXKFLGXLIFSKTPXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXGFFP 470
P AG P P P K L S +P P + P + PPP PPP G P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSP--PPPPTGSPPPPPAGGSP 295
Query: 469 PPXGXXXXXXPP 434
PP PP
Sbjct: 296 PPPRAGSPPPPP 307
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 514 PPKXRXPPPXXGFFPPPXGXXXXXXPP 434
PP PPP G PPP G PP
Sbjct: 313 PPTGSLPPPQAGGSPPPAGTGSPPPPP 339
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -2
Query: 580 PXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXGF----FPPP 464
P P +A+ P FF PPP+ PPP F PPP
Sbjct: 279 PHPMHHPYAMMPPPF--GFFPPPPRGHFPPPPPHFMGRGMPPP 319
Score = 28.7 bits (61), Expect = 8.4
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 1066 PPPXVFF*KXPPPKKXXXFXPPPPXF 989
PPP FF PPP + F PPPP F
Sbjct: 290 PPPFGFF---PPPPRGH-FPPPPPHF 311
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -2
Query: 580 PXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXGF----FPPP 464
P P +A+ P FF PPP+ PPP F PPP
Sbjct: 279 PHPMHHPYAMMPPPF--GFFPPPPRGHFPPPPPHFMGRGMPPP 319
Score = 28.7 bits (61), Expect = 8.4
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 1066 PPPXVFF*KXPPPKKXXXFXPPPPXF 989
PPP FF PPP + F PPPP F
Sbjct: 290 PPPFGFF---PPPPRGH-FPPPPPHF 311
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.3 bits (65), Expect = 2.7
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Frame = -2
Query: 649 PXAGPPXG--PNPXKFLGXLIFSKTPXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXGF 476
P A PP G P P + + + F P K +F Q PPP R P F
Sbjct: 716 PPAPPPPGVGPPPPQGIPPMGFD----PNKPPPPMFQQGFNAGA-PPPPFGRGAGPMSSF 770
Query: 475 FPPPXGXXXXXXPP 434
PPP G PP
Sbjct: 771 PPPPRGGMHHMPPP 784
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 3.6
Identities = 18/62 (29%), Positives = 22/62 (35%)
Frame = -2
Query: 649 PXAGPPXGPNPXKFLGXLIFSKTPXPXKGXWALFPQKXKGXFFXPPPKXRXPPPXXGFFP 470
P PP P P + P P A P + + PPP PPP + P
Sbjct: 93 PVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPP--PPPPPPHYPPPPPHYPP 150
Query: 469 PP 464
PP
Sbjct: 151 PP 152
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.5 bits (63), Expect = 4.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 517 PPPKXRXPPPXXGFFPPPXGXXXXXXPP 434
PPP+ P P G + PP G PP
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPP 187
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.5 bits (63), Expect = 4.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 517 PPPKXRXPPPXXGFFPPPXGXXXXXXPP 434
PPP+ P P G + PP G PP
Sbjct: 160 PPPRGYPPAPAPGVYMPPPGMPGAYPPP 187
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Frame = -2
Query: 535 KGXFFXPPPKXRX---PPPXXGFFPPPXGXXXXXXPP 434
K FF PPP PPP G PPP PP
Sbjct: 60 KPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPP 96
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 1066 PPPXVFF*KXPPPKKXXXFXPPPPXFF 986
PPP +F PPP PPPP F
Sbjct: 85 PPPPMFAGGIPPPPPMMGGIPPPPPMF 111
Score = 29.1 bits (62), Expect = 6.3
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = -2
Query: 517 PPPKXRXPPPXX-GFFPPPXGXXXXXXPP 434
P P PPP GF PPP G PP
Sbjct: 59 PKPSFFIPPPVPNGFIPPPPGPGGIPPPP 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,199,541
Number of Sequences: 27780
Number of extensions: 129142
Number of successful extensions: 548
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3203378606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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