Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B24
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.61
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 27 2.5
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 2.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.5
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 26 5.7
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.7
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 26 7.5
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 26 7.5
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 25 9.9
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 9.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.61
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 488 PPRLEPPRSNYSFAGAPFPPRAKLATPP 405
PP PPRSN + P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +2
Query: 8 ELKKEKSKERNSGSREVMRELSTSDTTFTLNPDTNE-LATKI---EEHTNLLLENTKKM- 172
EL + + E ++G V+++ + +N N+ L ++ + H+N++LEN K+M
Sbjct: 16 ELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMW 75
Query: 173 VELRETLEG--GGAVDGTIRGSRMVPRPD 253
E + T G G A++ S+M R D
Sbjct: 76 TEKKRTASGKKGKAINKDRFISKMFLRGD 104
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 154 QQQVCMFLDFSRQFIRVWVQCKCC 83
Q+QV D +F R+W QC+ C
Sbjct: 1020 QRQVAQVNDLEVRFARLWTQCQRC 1043
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 222 YGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 317
YG C LT +N++A R Q AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 104 DTNELATKIEEHTNLLLENTKKMVELRETLEG-GGAVDGTIRGSRMVPRPD 253
+T EL EE L + + + + T+ G GA++GTI G +P+PD
Sbjct: 22 ETKELMLNNEES----LSDWRNYFDEKLTIPGESGALNGTINGYLTLPQPD 68
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 5.7
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = -1
Query: 473 PPRSNYSFAGAPFP-------PRAKLATPPVIGSERLRLQVPGWRPGEQARRLEGDSAVS 315
PP SNY+ A P+ P++ A PP S R R+ P + PG +
Sbjct: 98 PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153
Query: 314 SDRPDRDRALRTSQRRDV 261
S RP A R + DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 47 SREVMRELSTSDTTFTLNPDTNELATKIEEHTNLLLENTKKMVELRET 190
+REV +E+ + T + + ++ A KIEE + + KK +++ET
Sbjct: 211 TREVEKEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKET 258
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 7.5
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +2
Query: 26 SKERNS-GSREVMREL--STSDTTFTLNPD-TNELATK---IEEHTNLLLENTKKMVELR 184
SKE+ + R+ R++ S +D +L+ D +E+A K I+ L E+TKK+ +LR
Sbjct: 551 SKEKTAVPPRQKSRDIIASVTDVISSLDKDFQDEMAAKQSMIDSAYTQLRESTKKLSDLR 610
Query: 185 ETL 193
E L
Sbjct: 611 EQL 613
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -2
Query: 598 HPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTD 488
H PT++ R R + + R + +RRD+ + D
Sbjct: 38 HEEQPPTENRRYARPTAQMNRVIEQQPRRRDYFQNND 74
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 158 NTKKMVELRETLEGGGAVDGTIRGSRMVPR 247
NT ++ LR +EG GA+ TIR S R
Sbjct: 216 NTAEINRLRNIIEGCGALVTTIRSSEFSAR 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,164
Number of Sequences: 5004
Number of extensions: 45056
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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