Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_B22
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   2.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.0  
AL117203-5|CAB55107.1|  291|Caenorhabditis elegans Hypothetical ...    28   9.2  

>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 506 PPXXXKTPPXXKKGKXXXXPXXFXPXGGGXXXPPPP 613
           PP     PP          P  F P G G   PPPP
Sbjct: 313 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 348



 Score = 25.0 bits (52), Expect(2) = 2.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 570 FXXPXGGGXXPPPPP 614
           F  P  GG  PPPPP
Sbjct: 335 FGPPGMGGMPPPPPP 349



 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 588 GGXXPPPPPXF 620
           GG  PPPPP +
Sbjct: 355 GGMPPPPPPRY 365


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 506 PPXXXKTPPXXKKGKXXXXPXXFXPXGGGXXXPPPP 613
           PP     PP          P  F P G G   PPPP
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 338



 Score = 25.0 bits (52), Expect(2) = 2.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 570 FXXPXGGGXXPPPPP 614
           F  P  GG  PPPPP
Sbjct: 325 FGPPGMGGMPPPPPP 339



 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 588 GGXXPPPPPXF 620
           GG  PPPPP +
Sbjct: 345 GGMPPPPPPRY 355


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +1

Query: 490 GGXXXXPPXXXNPPFXKKGKKXXXXXXFXPXXGGXKXPPPPP 615
           GG    PP    PP               P  GG   PPPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +1

Query: 490 GGXXXXPPXXXNPPFXKKGKKXXXXXXFXPXXGGXKXPPPPP 615
           GG    PP    PP               P  GG   PPPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +1

Query: 490 GGXXXXPPXXXNPPFXKKGKKXXXXXXFXPXXGGXKXPPPPP 615
           GG    PP    PP               P  GG   PPPPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348


>AL117203-5|CAB55107.1|  291|Caenorhabditis elegans Hypothetical
           protein Y48C3A.8 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 585 GGGXXPPPPPXFXKXXXXXGGG 650
           GGG  PPPPP         GGG
Sbjct: 162 GGGSVPPPPPAATAAVSMNGGG 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,592,900
Number of Sequences: 27780
Number of extensions: 242139
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)