Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B18
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 32 0.59
06_03_1310 + 29238644-29240260 32 0.59
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 29 4.2
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 29 5.5
01_06_1224 - 35508842-35510404 29 5.5
01_05_0227 - 19512866-19514983 29 5.5
08_02_1474 - 27365548-27366054 28 7.3
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 28 7.3
12_02_0985 + 25052753-25053691 28 9.6
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 161 EEEKALTKEGMAEAAETXKGTISSMNRSSRNPVAK 57
E+++ LTK G + +ET KG++ S++RS A+
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRSESRVKAR 185
>06_03_1310 + 29238644-29240260
Length = 538
Score = 31.9 bits (69), Expect = 0.59
Identities = 24/80 (30%), Positives = 33/80 (41%)
Frame = +3
Query: 543 AGHPFILSHYYWRSRPYASSHPPLRSRLHQXDHQIPDSIHQPPQT*HPFPSIPXTPY*XE 722
A HPF S ++ P + P R+ L H+ P H PP+ P P P +P
Sbjct: 351 AAHPFDCSKAQCQATPPTTRRPGGRTPL--APHRSPLPHHMPPRRTPPTPPPPSSPTPSH 408
Query: 723 FAPGLKPPLSSXAHQRX*PP 782
P PP S + + PP
Sbjct: 409 LPP--PPPTYSESPKSSMPP 426
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 614 AISATSXRSSNPRFHTPTTP 673
A S+T+ R S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 304 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVTSIIKGYRDAYLVNLEAVVFPSAPSLKI 483
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 484 PVTVDLCWTTADVTVEGVNVLATPSS 561
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>01_06_1224 - 35508842-35510404
Length = 520
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = +3
Query: 588 PYASSH----PPLRS--RLHQXDHQIPDSIHQPPQT*HPFPSIPXTPY*XEFAPGLKPP 746
PY+ SH PPL+ L+ D H PP P P + P EF GL PP
Sbjct: 25 PYSPSHADLSPPLQEVYSLYNPDDPPASETHLPPYAPPPAPVVSELPDDLEF--GLHPP 81
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 530 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 438
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>08_02_1474 - 27365548-27366054
Length = 168
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = -2
Query: 687 MDVKSGVVGVWNRGFDDRXDVAEIAGEGGLMHKGETANSNARG*RGG 547
M G VGVW R D AG G + +G A RG RGG
Sbjct: 78 MGALCGEVGVWRRKIGDSRRSGGAAGGGAAVGRG--AAVGGRGARGG 122
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 478 KIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ 600
K+ V +D TAD+++ +N+L P G L+HQ
Sbjct: 209 KVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQ 249
>12_02_0985 + 25052753-25053691
Length = 312
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 593 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTRYASR*P 414
+ +R + +R D S+ + +T S + S + GAEG TTAS LT S P
Sbjct: 127 VSSRTGLFLRGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALTCVTSTSP 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,477
Number of Sequences: 37544
Number of extensions: 433494
Number of successful extensions: 1275
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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