Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_B16
         (983 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.016
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.1 bits (67), Expect = 0.016
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +2

Query: 761 PTXXAPXXPPAHHTXXXLPPPNPPXQXXXPPPPGXPP 871
           P+  AP   P+ H     P    P      PPPG PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/39 (25%), Positives = 13/39 (33%)
 Frame = +2

Query: 752 PXPPTXXAPXXPPAHHTXXXLPPPNPPXQXXXPPPPGXP 868
           P P     P   P ++    +P P PP       P   P
Sbjct: 112 PHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 150



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +2

Query: 752 PXPPTXXAPXXPPAHHTXXXLPPPNPP 832
           P P     P   P ++    +P P PP
Sbjct: 138 PHPRLRREPEAEPGNNRPVYIPQPRPP 164


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 858  GGGGXXXXSGGLGG 817
            GGGG     GGLGG
Sbjct: 1705 GGGGSLAGLGGLGG 1718


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 858  GGGGXXXXSGGLGG 817
            GGGG     GGLGG
Sbjct: 1701 GGGGSLAGLGGLGG 1714


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,871
Number of Sequences: 438
Number of extensions: 4888
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)