Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_B14
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 746 GLPXPPXXHPGPXPPXXPPGGXSPG 820
           G P PP   PG  PP  PP    PG
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +2

Query: 722 PGXXXAXXGLPXPPXXHPGPXPPXXPPGGXSPGXXGLXAXAPPXXVSPG 868
           P    A   +P P     GP PP  PPG    G        PP  VS G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP--PPPPPPPAVSAG 788



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +2

Query: 752 PXPPXXHPGPXPPXXPPGGXSPGXXGLXAXAPPXXVSP 865
           P P     GP PP  PP   S G     A AP     P
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 46  YWNRSVVIKCRRLILFCXPXLLTCAI 123
           YW R +   C R +L C P L+T  I
Sbjct: 371 YWFRVLFNACMRWVLVCWPVLVTMII 396


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 758 PPXXHPGPXPPXXPPGGXSPGXXGLXAXAP 847
           P   +PG  P   P GG +PG  G+ A  P
Sbjct: 509 PMPMYPG-MPTQFPAGGPAPGYPGMNARGP 537


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 748  PPXPSXXPSGPXPPXGXPGRAXPXAXGP 831
            PP P+  PS P PP   P  + P    P
Sbjct: 1721 PPMPAGPPSAPPPP--LPASSAPSVPNP 1746


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 245 IQGQVD-YDFGVRGETPDRTLTRSESIMRDSDVAFSHSAALAIAQVRRXGXQNNISRRHF 69
           +QG  D  +    G TP+     +ESI+   +       +L ++  R     +N S  H 
Sbjct: 232 VQGAADDEEEWSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHL 291

Query: 68  MTTDLF 51
           + T +F
Sbjct: 292 LPTPIF 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,099
Number of Sequences: 5004
Number of extensions: 33039
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)