Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_B14
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.24 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 327 LSWNAGXMGLXPXGWCPPERLXRPDVVMXXTAXXPXSG 440
           + WN    G       PP RL +PDV+M  +A     G
Sbjct: 85  MRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDG 122


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 219 KIVVNLTLD-LRHANXRESESTVRILAXLXXXGIGKRLSWNAGXMGLXPXGWCPPERLXR 395
           K+ VN  L  ++  N  E    ++    L       +L W+    G       PP+++ +
Sbjct: 51  KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110

Query: 396 PDVVMXXTA 422
           PD+V+   A
Sbjct: 111 PDIVLFNNA 119


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 722 PGXXXAXXGLPXPPXXHPGPXPPXXPPGGXSPG 820
           PG   +    P  P     P P   PP G  PG
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 531 PTQEXPPAGXPXXPP 575
           P+Q  PP G P  PP
Sbjct: 42  PSQGPPPGGPPGAPP 56


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 324 RLSWNAGXMGLXPXGWCPPERLXRPDVVMXXTA 422
           +L WN    G     + P E +  PD+V+   A
Sbjct: 94  KLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 324 RLSWNAGXMGLXPXGWCPPERLXRPDVVMXXTA 422
           +L WN    G       P E +  PD+V+   A
Sbjct: 81  KLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,249
Number of Sequences: 438
Number of extensions: 3801
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)