Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B12
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 30 1.9
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882... 30 2.5
07_03_1107 - 24024387-24024497,24025799-24026410 29 3.3
08_02_0038 + 11497286-11497876 29 4.3
10_08_0187 + 15592130-15592512,15592597-15592972 28 7.6
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 28 7.6
02_01_0054 - 404464-405152,406087-406618 28 7.6
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +1
Query: 76 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 255
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 256 LDRQTTELERRXSGAAALGW 315
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>07_03_1400 +
26287124-26287298,26287925-26288007,26288141-26288270,
26288369-26288442,26288797-26288883,26288976-26289100,
26289232-26289292,26289606-26289683,26289785-26289890,
26289978-26290123,26290264-26290380
Length = 393
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 376 PGYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
PGY+ R +G+ SW+ ++++ W ND+++C F+ SR +S+ M+
Sbjct: 66 PGYHLHRG--FGSGANSWL--------VNLEGGGWCNDVKSCVFRKSSRRGSSNHME 112
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 402 TGAESVVPRRWLQPRLAVPRQASTSVPRTPAKCCSPTXPA 283
T A + P P + P A+ + P TPA +PT PA
Sbjct: 43 TPAPAAAPTTTTPPAASTPPAAAPTTPATPAPAEAPTTPA 82
>08_02_0038 + 11497286-11497876
Length = 196
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = -2
Query: 766 RQXAGEQXAGAPTXNTGXXRQRVXRGXVSGKTXGTLPRELPPRHXPGXAPXWTE 605
R+ G G + R+R RG V +L PPR PG A W +
Sbjct: 39 RRADGRSFVGEGNEESRLLRRRHHRGYVGPAACRSLSLMGPPRRRPGCAALWED 92
>10_08_0187 + 15592130-15592512,15592597-15592972
Length = 252
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 268 TTELERRXSGAAALGWCPRNACGGLTWYC*TRLQPPPGY 384
+T ER +GAAA G C RN G W C + PGY
Sbjct: 125 STTSERDVTGAAAAGRCSRN--DGKRWRC--KSAAVPGY 159
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 49 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 189
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 374 GGCSRV*QYHVRPPQAFRGHQPSAAAPLXLRSNSVVCRSNS 252
GGCS + PP AFRG+ + P+ + V CR+ S
Sbjct: 68 GGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 7.6
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -2
Query: 322 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 164
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 163 GVGGGVPIVRCEERVDHEG 107
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,282,784
Number of Sequences: 37544
Number of extensions: 481342
Number of successful extensions: 1302
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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