Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B12
(803 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X78349-1|CAA55144.1| 686|Drosophila melanogaster Grd protein. 37 0.037
AE014296-2969|AAF49298.2| 686|Drosophila melanogaster CG7446-PA... 37 0.037
X07956-1|CAA30778.1| 521|Drosophila melanogaster protein ( D. m... 36 0.049
X04016-3|CAA27641.1| 521|Drosophila melanogaster nicotinic AChR... 36 0.049
M20316-1|AAA28311.1| 521|Drosophila melanogaster protein ( D.me... 36 0.049
AE014296-848|AAF47900.1| 521|Drosophila melanogaster CG11348-PA... 36 0.049
BT022901-1|AAY55317.1| 612|Drosophila melanogaster IP12579p pro... 35 0.11
BT022889-1|AAY55305.1| 416|Drosophila melanogaster IP12479p pro... 35 0.11
AE014298-2285|AAF48539.3| 572|Drosophila melanogaster CG8916-PA... 35 0.11
EF458626-1|ABO26063.1| 560|Drosophila melanogaster nicotinic ac... 35 0.15
AJ554210-1|CAD86936.1| 542|Drosophila melanogaster nicotinic ac... 35 0.15
AE014298-2836|AAS65409.1| 560|Drosophila melanogaster CG32538-P... 35 0.15
AE014298-2835|AAF48950.3| 541|Drosophila melanogaster CG32538-P... 35 0.15
AF321449-1|AAM13396.1| 523|Drosophila melanogaster nicotinic ac... 34 0.20
Y15594-1|CAA75689.1| 776|Drosophila melanogaster nicotinic acet... 33 0.46
Y15593-1|CAA75688.1| 795|Drosophila melanogaster nicotinic acet... 33 0.46
X53583-1|CAA37652.1| 576|Drosophila melanogaster alpha-2-subuni... 33 0.46
X52274-1|CAA36517.1| 576|Drosophila melanogaster nicotinic acet... 33 0.46
AY058446-1|AAL13675.1| 576|Drosophila melanogaster GH22843p pro... 33 0.46
AJ272159-1|CAB77445.1| 568|Drosophila melanogaster nicotinic ac... 33 0.46
AE014298-1164|AAF46361.2| 783|Drosophila melanogaster CG2302-PA... 33 0.46
AE014297-3556|AAF56303.1| 576|Drosophila melanogaster CG6844-PB... 33 0.46
AE014297-3555|AAF56302.2| 576|Drosophila melanogaster CG6844-PA... 33 0.46
AF321445-1|AAM13392.1| 494|Drosophila melanogaster nicotinic ac... 33 0.60
AE014134-1706|AAS64672.1| 509|Drosophila melanogaster CG4128-PD... 33 0.60
AE014134-1705|AAS64671.1| 523|Drosophila melanogaster CG4128-PE... 33 0.60
AE014134-1704|AAF52817.3| 494|Drosophila melanogaster CG4128-PA... 33 0.60
AE014134-1703|AAS64670.1| 494|Drosophila melanogaster CG4128-PB... 33 0.60
AE014134-1702|AAN10709.2| 494|Drosophila melanogaster CG4128-PC... 33 0.60
X55676-1|CAA39211.1| 500|Drosophila melanogaster second beta su... 32 0.80
AY089498-1|AAL90236.1| 238|Drosophila melanogaster GH09870p pro... 32 0.80
AY061622-1|AAL29170.1| 327|Drosophila melanogaster SD09326p pro... 32 0.80
AY005148-1|AAF89090.1| 441|Drosophila melanogaster nicotinic ac... 32 0.80
AJ318761-1|CAC48166.1| 441|Drosophila melanogaster nicotinic ac... 32 0.80
AJ272160-1|CAB77446.1| 60|Drosophila melanogaster nicotinic ac... 32 0.80
AF321447-1|AAM13394.1| 494|Drosophila melanogaster nicotinic ac... 32 0.80
AE014297-3558|AAN13998.1| 304|Drosophila melanogaster CG6798-PB... 32 0.80
AE014297-3557|AAF56304.1| 519|Drosophila melanogaster CG6798-PA... 32 0.80
AE014134-121|AAN10500.1| 327|Drosophila melanogaster CG11822-PB... 32 0.80
AE014134-120|AAF51485.1| 441|Drosophila melanogaster CG11822-PA... 32 0.80
AF321448-1|AAM13395.1| 509|Drosophila melanogaster nicotinic ac... 32 1.1
AF321446-1|AAM13393.1| 494|Drosophila melanogaster nicotinic ac... 32 1.1
BT011147-1|AAR82815.1| 508|Drosophila melanogaster GH15518p pro... 31 1.4
AJ554209-1|CAD86935.1| 494|Drosophila melanogaster nicotinic ac... 31 1.4
AF272778-1|AAM13390.1| 807|Drosophila melanogaster nicotinic ac... 31 1.8
AE014134-2461|AAS64703.1| 808|Drosophila melanogaster CG32975-P... 31 1.8
AY036614-1|AAK67257.1| 219|Drosophila melanogaster nicotinic ac... 31 2.4
AE014298-2837|AAS65410.1| 219|Drosophila melanogaster CG32538-P... 31 2.4
U58776-1|AAC47266.1| 456|Drosophila melanogaster glutamate-gate... 30 4.3
DQ665648-1|ABG57261.1| 453|Drosophila melanogaster glutamate-ga... 30 4.3
BT028797-1|ABI34178.1| 263|Drosophila melanogaster IP16167p pro... 30 4.3
AJ002232-1|CAA05260.1| 454|Drosophila melanogaster DrosGluCl pr... 30 4.3
AF297501-1|AAG40736.1| 336|Drosophila melanogaster glutamate-ga... 30 4.3
AF297500-1|AAG40735.1| 456|Drosophila melanogaster glutamate-ga... 30 4.3
AE014297-2703|AAF55695.1| 454|Drosophila melanogaster CG7535-PA... 30 4.3
AE014297-2702|AAX52967.1| 455|Drosophila melanogaster CG7535-PC... 30 4.3
AE014297-2701|ABC66182.1| 454|Drosophila melanogaster CG7535-PD... 30 4.3
AE014297-2700|AAN13808.1| 454|Drosophila melanogaster CG7535-PB... 30 4.3
AE014134-2462|AAF53374.3| 570|Drosophila melanogaster CG32975-P... 29 5.6
AE014134-2460|AAS64702.1| 786|Drosophila melanogaster CG32975-P... 29 5.6
X07194-1|CAA30172.1| 567|Drosophila melanogaster mature acetylc... 29 9.8
AY036613-1|AAK67256.1| 482|Drosophila melanogaster nicotinic ac... 29 9.8
>X78349-1|CAA55144.1| 686|Drosophila melanogaster Grd protein.
Length = 686
Score = 36.7 bits (81), Expect = 0.037
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ NG V + RL I M L ++P D+Q C KFGS
Sbjct: 214 RIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGS 253
Score = 32.7 bits (71), Expect = 0.60
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 83 ECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQ 250
+ N ++S ++D+LL YD PD + + + +R I E + T + +
Sbjct: 102 QSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFR 161
Query: 251 MNWIDKRLSW 280
+W+DKRL++
Sbjct: 162 QSWVDKRLAF 171
>AE014296-2969|AAF49298.2| 686|Drosophila melanogaster CG7446-PA
protein.
Length = 686
Score = 36.7 bits (81), Expect = 0.037
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ NG V + RL I M L ++P D+Q C KFGS
Sbjct: 214 RIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGS 253
Score = 32.7 bits (71), Expect = 0.60
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 83 ECENATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQ 250
+ N ++S ++D+LL YD PD + + + +R I E + T + +
Sbjct: 102 QSNNHANISELLDNLLRGYDNSIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFR 161
Query: 251 MNWIDKRLSW 280
+W+DKRL++
Sbjct: 162 QSWVDKRLAF 171
>X07956-1|CAA30778.1| 521|Drosophila melanogaster protein ( D.
melanogaster ardgene exons 1-2 (fragment Xba-IN2 of
gARD5) for nicotinicacetylcholine receptor. ).
Length = 521
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 385 YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI--D 558
Y + G V W+ + ++ + +P D QTC KFGS N D++ + +
Sbjct: 128 YKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNN 187
Query: 559 KRIYSM---FESXAWDV 600
K + ++S WD+
Sbjct: 188 KNFVDLSDYWKSGTWDI 204
>X04016-3|CAA27641.1| 521|Drosophila melanogaster nicotinic AChR
protein.
Length = 521
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 385 YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI--D 558
Y + G V W+ + ++ + +P D QTC KFGS N D++ + +
Sbjct: 128 YKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNN 187
Query: 559 KRIYSM---FESXAWDV 600
K + ++S WD+
Sbjct: 188 KNFVDLSDYWKSGTWDI 204
>M20316-1|AAA28311.1| 521|Drosophila melanogaster protein (
D.melanogaster acetylcholinereceptor-related protein
mRNA, complete cds. ).
Length = 521
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 385 YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI--D 558
Y + G V W+ + ++ + +P D QTC KFGS N D++ + +
Sbjct: 128 YKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNN 187
Query: 559 KRIYSM---FESXAWDV 600
K + ++S WD+
Sbjct: 188 KNFVDLSDYWKSGTWDI 204
>AE014296-848|AAF47900.1| 521|Drosophila melanogaster CG11348-PA,
isoform A protein.
Length = 521
Score = 36.3 bits (80), Expect = 0.049
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 385 YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI--D 558
Y + G V W+ + ++ + +P D QTC KFGS N D++ + +
Sbjct: 128 YKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNN 187
Query: 559 KRIYSM---FESXAWDV 600
K + ++S WD+
Sbjct: 188 KNFVDLSDYWKSGTWDI 204
>BT022901-1|AAY55317.1| 612|Drosophila melanogaster IP12579p
protein.
Length = 612
Score = 35.1 bits (77), Expect = 0.11
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ NG + + RL I M+L N+P D Q+C GS
Sbjct: 214 RLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGS 253
>BT022889-1|AAY55305.1| 416|Drosophila melanogaster IP12479p
protein.
Length = 416
Score = 35.1 bits (77), Expect = 0.11
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ NG + + RL I M+L N+P D Q+C GS
Sbjct: 18 RLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGS 57
>AE014298-2285|AAF48539.3| 572|Drosophila melanogaster CG8916-PA
protein.
Length = 572
Score = 35.1 bits (77), Expect = 0.11
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ NG + + RL I M+L N+P D Q+C GS
Sbjct: 200 RLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGS 239
>EF458626-1|ABO26063.1| 560|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha7 protein.
Length = 560
Score = 34.7 bits (76), Expect = 0.15
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G YA V NNGS ++ + + + +P D Q C KFGS ++ ++D +
Sbjct: 159 GTYATNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQ 218
Query: 559 KR----IYSMFESXAWDV 600
I S + WD+
Sbjct: 219 DEAGGDISSFITNGEWDL 236
>AJ554210-1|CAD86936.1| 542|Drosophila melanogaster nicotinic
acetylcholine receptorsubunit Dalpha7 protein.
Length = 542
Score = 34.7 bits (76), Expect = 0.15
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G YA V NNGS ++ + + + +P D Q C KFGS ++ ++D +
Sbjct: 137 GTYATNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQ 196
Query: 559 KR----IYSMFESXAWDV 600
I S + WD+
Sbjct: 197 DEAGGDISSFITNGEWDL 214
>AE014298-2836|AAS65409.1| 560|Drosophila melanogaster CG32538-PA,
isoform A protein.
Length = 560
Score = 34.7 bits (76), Expect = 0.15
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G YA V NNGS ++ + + + +P D Q C KFGS ++ ++D +
Sbjct: 159 GTYATNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQ 218
Query: 559 KR----IYSMFESXAWDV 600
I S + WD+
Sbjct: 219 DEAGGDISSFITNGEWDL 236
>AE014298-2835|AAF48950.3| 541|Drosophila melanogaster CG32538-PB,
isoform B protein.
Length = 541
Score = 34.7 bits (76), Expect = 0.15
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G YA V NNGS ++ + + + +P D Q C KFGS ++ ++D +
Sbjct: 140 GTYATNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQ 199
Query: 559 KR----IYSMFESXAWDV 600
I S + WD+
Sbjct: 200 DEAGGDISSFITNGEWDL 217
>AF321449-1|AAM13396.1| 523|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha6 subunit variant type V
protein.
Length = 523
Score = 34.3 bits (75), Expect = 0.20
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V +NGS ++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 128 GTYHTNIVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 187
>Y15594-1|CAA75689.1| 776|Drosophila melanogaster nicotinic
acetylcholine receptoralpha 3 subunit protein.
Length = 776
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 388 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
A +A ++ G V W + + ++ +P D QTC KFGS ++ ++D
Sbjct: 108 ATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 160
>Y15593-1|CAA75688.1| 795|Drosophila melanogaster nicotinic
acetylcholine receptoralpha 3 subunit protein.
Length = 795
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 388 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
A +A ++ G V W + + ++ +P D QTC KFGS ++ ++D
Sbjct: 127 ATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 179
>X53583-1|CAA37652.1| 576|Drosophila melanogaster alpha-2-subunit
nicotinic acetylcholinereceptor precursor protein.
Length = 576
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + + + +P D QTC KFGS ++ D++D
Sbjct: 148 KAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQID 198
>X52274-1|CAA36517.1| 576|Drosophila melanogaster nicotinic
acetylcholine receptoralpha subunit protein.
Length = 576
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + + + +P D QTC KFGS ++ D++D
Sbjct: 148 KAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQID 198
>AY058446-1|AAL13675.1| 576|Drosophila melanogaster GH22843p
protein.
Length = 576
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + + + +P D QTC KFGS ++ D++D
Sbjct: 148 KAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQID 198
>AJ272159-1|CAB77445.1| 568|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha 4 subunit protein.
Length = 568
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 388 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
A +A + + G V W + + ++ +P D QTC KFGS ++ ++D
Sbjct: 142 ATKATIYSEGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVD 194
>AE014298-1164|AAF46361.2| 783|Drosophila melanogaster CG2302-PA
protein.
Length = 783
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 388 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
A +A ++ G V W + + ++ +P D QTC KFGS ++ ++D
Sbjct: 127 ATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 179
>AE014297-3556|AAF56303.1| 576|Drosophila melanogaster CG6844-PB,
isoform B protein.
Length = 576
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + + + +P D QTC KFGS ++ D++D
Sbjct: 148 KAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQID 198
>AE014297-3555|AAF56302.2| 576|Drosophila melanogaster CG6844-PA,
isoform A protein.
Length = 576
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + + + +P D QTC KFGS ++ D++D
Sbjct: 148 KAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQID 198
>AF321445-1|AAM13392.1| 494|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha6 subunit variant type I
protein.
Length = 494
Score = 32.7 bits (71), Expect = 0.60
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V +NGS ++ + + + +P D Q C KFGS ++ +++D V++
Sbjct: 128 GTYHTNIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 187
>AE014134-1706|AAS64672.1| 509|Drosophila melanogaster CG4128-PD,
isoform D protein.
Length = 509
Score = 32.7 bits (71), Expect = 0.60
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V +NGS ++ + + + +P D Q C KFGS ++ +++D V++
Sbjct: 143 GTYHTNIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 202
>AE014134-1705|AAS64671.1| 523|Drosophila melanogaster CG4128-PE,
isoform E protein.
Length = 523
Score = 32.7 bits (71), Expect = 0.60
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V +NGS ++ + + + +P D Q C KFGS ++ +++D V++
Sbjct: 128 GTYHTNIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 187
>AE014134-1704|AAF52817.3| 494|Drosophila melanogaster CG4128-PA,
isoform A protein.
Length = 494
Score = 32.7 bits (71), Expect = 0.60
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V +NGS ++ + + + +P D Q C KFGS ++ +++D V++
Sbjct: 128 GTYHTNIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 187
>AE014134-1703|AAS64670.1| 494|Drosophila melanogaster CG4128-PB,
isoform B protein.
Length = 494
Score = 32.7 bits (71), Expect = 0.60
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V +NGS ++ + + + +P D Q C KFGS ++ +++D V++
Sbjct: 128 GTYHTNIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 187
>AE014134-1702|AAN10709.2| 494|Drosophila melanogaster CG4128-PC,
isoform C protein.
Length = 494
Score = 32.7 bits (71), Expect = 0.60
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V +NGS ++ + + + +P D Q C KFGS ++ +++D V++
Sbjct: 128 GTYHTNIVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 187
>X55676-1|CAA39211.1| 500|Drosophila melanogaster second beta
subunit of nicotinicacetylcholine receptor protein.
Length = 500
Score = 32.3 bits (70), Expect = 0.80
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + M ++ +P D Q C KFGS +N ++D
Sbjct: 114 KATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVD 164
>AY089498-1|AAL90236.1| 238|Drosophila melanogaster GH09870p
protein.
Length = 238
Score = 32.3 bits (70), Expect = 0.80
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + M ++ +P D Q C KFGS +N ++D
Sbjct: 133 KATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVD 183
>AY061622-1|AAL29170.1| 327|Drosophila melanogaster SD09326p
protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.80
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 403 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
+S++G W+ + + + NWP+D Q+C K GS
Sbjct: 153 LSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGS 191
>AY005148-1|AAF89090.1| 441|Drosophila melanogaster nicotinic
acetylcholine receptorbeta subunit protein.
Length = 441
Score = 32.3 bits (70), Expect = 0.80
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 403 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
+S++G W+ + + + NWP+D Q+C K GS
Sbjct: 153 LSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGS 191
>AJ318761-1|CAC48166.1| 441|Drosophila melanogaster nicotinic
acetylcholine receptorbeta 3 (Dbeta3) subunit protein.
Length = 441
Score = 32.3 bits (70), Expect = 0.80
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 403 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
+S++G W+ + + + NWP+D Q+C K GS
Sbjct: 153 LSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGS 191
>AJ272160-1|CAB77446.1| 60|Drosophila melanogaster nicotinic
acetylcyoline receptorDalpha 4 subunit protein.
Length = 60
Score = 32.3 bits (70), Expect = 0.80
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
+A V NNG V W + S+ ++ +P D++TC K GS
Sbjct: 12 KAIVYNNGLVIWQPPAVYKSSCSIDVEYFPYDVRTCILKLGS 53
>AF321447-1|AAM13394.1| 494|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha6 subunit variant type III
protein.
Length = 494
Score = 32.3 bits (70), Expect = 0.80
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V ++GS ++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 128 GTYHTNIVVKHSGSCLYVPPGIFKSTCKMDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 187
>AE014297-3558|AAN13998.1| 304|Drosophila melanogaster CG6798-PB,
isoform B protein.
Length = 304
Score = 32.3 bits (70), Expect = 0.80
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + M ++ +P D Q C KFGS +N ++D
Sbjct: 133 KATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVD 183
>AE014297-3557|AAF56304.1| 519|Drosophila melanogaster CG6798-PA,
isoform A protein.
Length = 519
Score = 32.3 bits (70), Expect = 0.80
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + M ++ +P D Q C KFGS +N ++D
Sbjct: 133 KATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVD 183
>AE014134-121|AAN10500.1| 327|Drosophila melanogaster CG11822-PB,
isoform B protein.
Length = 327
Score = 32.3 bits (70), Expect = 0.80
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 403 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
+S++G W+ + + + NWP+D Q+C K GS
Sbjct: 153 LSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGS 191
>AE014134-120|AAF51485.1| 441|Drosophila melanogaster CG11822-PA,
isoform A protein.
Length = 441
Score = 32.3 bits (70), Expect = 0.80
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 403 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
+S++G W+ + + + NWP+D Q+C K GS
Sbjct: 153 LSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGS 191
>AF321448-1|AAM13395.1| 509|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha6 subunit variant type IV
protein.
Length = 509
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V +GS ++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 143 GTYHTNIVVKRSGSCLYVPPGIFKSTCKMDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 202
>AF321446-1|AAM13393.1| 494|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha6 subunit variant type II
protein.
Length = 494
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V + GS ++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 128 GTYHTNIVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCEMKFGSWTYDGNQLDLVLN 187
>BT011147-1|AAR82815.1| 508|Drosophila melanogaster GH15518p
protein.
Length = 508
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V + GS ++ + M + +P D Q C KFGS ++ +++D V+
Sbjct: 142 GTYHTSVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCEMKFGSWTYDGNQLDLVL 200
>AJ554209-1|CAD86935.1| 494|Drosophila melanogaster nicotinic
acetylcholine receptorsubunit Dalpha6 protein.
Length = 494
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V + GS ++ + M + +P D Q C KFGS ++ +++D V+
Sbjct: 128 GTYHTSVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCEMKFGSWTYDGNQLDLVL 186
>AF272778-1|AAM13390.1| 807|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha5 subunit protein.
Length = 807
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
G Y V NNGS ++ + + + +P D Q C KFGS ++ ++D
Sbjct: 410 GTYQTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLD 465
>AE014134-2461|AAS64703.1| 808|Drosophila melanogaster CG32975-PB,
isoform B protein.
Length = 808
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
G Y V NNGS ++ + + + +P D Q C KFGS ++ ++D
Sbjct: 411 GTYQTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLD 466
>AY036614-1|AAK67257.1| 219|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha7 subunit protein.
Length = 219
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
G YA V NNGS ++ + + + +P D Q C KFGS
Sbjct: 159 GTYATNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGS 205
>AE014298-2837|AAS65410.1| 219|Drosophila melanogaster CG32538-PC,
isoform C protein.
Length = 219
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
G YA V NNGS ++ + + + +P D Q C KFGS
Sbjct: 159 GTYATNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGS 205
>U58776-1|AAC47266.1| 456|Drosophila melanogaster glutamate-gated
chloride channel protein.
Length = 456
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 144 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 194
>DQ665648-1|ABG57261.1| 453|Drosophila melanogaster glutamate-gated
chloride channel protein.
Length = 453
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 144 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 194
>BT028797-1|ABI34178.1| 263|Drosophila melanogaster IP16167p
protein.
Length = 263
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 66 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 116
>AJ002232-1|CAA05260.1| 454|Drosophila melanogaster DrosGluCl
protein.
Length = 454
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 144 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 194
>AF297501-1|AAG40736.1| 336|Drosophila melanogaster glutamate-gated
chloride channel protein.
Length = 336
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 144 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 194
>AF297500-1|AAG40735.1| 456|Drosophila melanogaster glutamate-gated
chloride channel protein.
Length = 456
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 144 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 194
>AE014297-2703|AAF55695.1| 454|Drosophila melanogaster CG7535-PA,
isoform A protein.
Length = 454
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 144 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 194
>AE014297-2702|AAX52967.1| 455|Drosophila melanogaster CG7535-PC,
isoform C protein.
Length = 455
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 145 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 195
>AE014297-2701|ABC66182.1| 454|Drosophila melanogaster CG7535-PD,
isoform D protein.
Length = 454
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 144 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 194
>AE014297-2700|AAN13808.1| 454|Drosophila melanogaster CG7535-PB,
isoform B protein.
Length = 454
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S ++++ F+
Sbjct: 144 RIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFL 194
>AE014134-2462|AAF53374.3| 570|Drosophila melanogaster CG32975-PA,
isoform A protein.
Length = 570
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V NNGS ++ + + + +P D Q C KFGS ++ ++ F +
Sbjct: 362 GTYQTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQVWFSV 420
>AE014134-2460|AAS64702.1| 786|Drosophila melanogaster CG32975-PC,
isoform C protein.
Length = 786
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V NNGS ++ + + + +P D Q C KFGS ++ ++ F +
Sbjct: 411 GTYQTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQVWFSV 469
>X07194-1|CAA30172.1| 567|Drosophila melanogaster mature
acetylcholine receptoralpha-like subunit protein.
Length = 567
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 297 GCSTWLVSSERLWRPDVVLLNAA 365
G T V SE +W PD+VL N A
Sbjct: 95 GVDTLHVPSEHIWHPDIVLYNNA 117
>AY036613-1|AAK67256.1| 482|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha5 subunit protein.
Length = 482
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
G Y V NNGS ++ + + + +P D Q C KFGS
Sbjct: 411 GTYQTNVVVRNNGSCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGS 457
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,763,848
Number of Sequences: 53049
Number of extensions: 768685
Number of successful extensions: 2104
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2104
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -