Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B12
(803 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 39 6e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 8e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 34 0.001
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 34 0.002
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 33 0.003
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 33 0.004
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 32 0.005
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 32 0.005
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 32 0.007
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 32 0.007
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.009
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.013
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.017
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.022
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.022
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 29 0.038
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 29 0.050
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 29 0.067
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 29 0.067
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 27 0.15
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 27 0.20
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 27 0.20
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 27 0.20
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 27 0.27
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 27 0.27
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 27 0.27
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 27 0.27
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 27 0.27
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 403 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSM 576
V ++GSVS + + + +WP D C FGS +H+ +E++ +DK+ + M
Sbjct: 151 VFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.7 bits (86), Expect = 6e-05
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +1
Query: 385 YALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI--D 558
Y + NG V W+ + ++ + +P D QTC KFGS N D++ + +
Sbjct: 127 YKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNN 186
Query: 559 KRIYSM---FESXAWDV 600
K + ++S WD+
Sbjct: 187 KNFVDLSDYWKSGTWDI 203
Score = 24.2 bits (50), Expect = 1.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +3
Query: 324 ERLWRPDVVLLNAA 365
+++W+PD+VL N A
Sbjct: 106 DKVWKPDIVLFNNA 119
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 164 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 86 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 250
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 251 MNWIDKRLSWNA 286
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
Score = 25.4 bits (53), Expect = 0.62
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 478 WPNDMQTCTFKFGSRMHNSDEM 543
WP D+ CT S H S+E+
Sbjct: 166 WPYDILNCTIHIASWSHGSNEI 187
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 35.1 bits (77), Expect = 8e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ +G V + RL I M L+N+P D Q C +FGS
Sbjct: 111 RLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 259
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 260 IDKRLSWNAG 289
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 34.3 bits (75), Expect = 0.001
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+S +G + + RL I M+L N+P D Q+C GS
Sbjct: 143 RISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182
Score = 22.2 bits (45), Expect = 5.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 324 ERLWRPDVVLLN 359
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 33.9 bits (74), Expect = 0.002
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G VSW + + ++ +P D Q+C KFGS +N ++D
Sbjct: 137 KATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNGAQVD 187
Score = 26.2 bits (55), Expect = 0.36
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 297 GCSTWLVSSERLWRPDVVLLNAA 365
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 33.1 bits (72), Expect = 0.003
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V++NGS ++ + + + +P D Q C KFGS ++ +++D V+
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
++ +LW+PD+++ N+A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 33.1 bits (72), Expect = 0.003
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V++NGS ++ + + + +P D Q C KFGS ++ +++D V+
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
++ +LW+PD+++ N+A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.1 bits (72), Expect = 0.003
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 388 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
A +A + + G V W + + ++ +P D QTC KFGS ++ ++D
Sbjct: 130 ATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVD 182
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.003
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 388 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
A +A ++ G V W + + ++ +P D QTC KFGS ++ ++D
Sbjct: 126 ATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.004
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V++NGS ++ + + + +P D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 32.3 bits (70), Expect = 0.005
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S +D++ F+
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFL 191
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 32.3 bits (70), Expect = 0.005
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
R+ NGSV + R+ ++ M L +P D Q C+ + S +D++ F+
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFL 191
Score = 27.9 bits (59), Expect = 0.12
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 113 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 271
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 272 LSWN 283
L +N
Sbjct: 95 LRFN 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 31.9 bits (69), Expect = 0.007
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V+++GS ++ + M + +P D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.9 bits (69), Expect = 0.007
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
G Y V NNG+ ++ + + + +P D Q C KFGS ++ ++D +
Sbjct: 122 GTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLDLQLQ 181
Query: 559 KR----IYSMFESXAWDV 600
I S + WD+
Sbjct: 182 DEAGGDISSFITNGEWDL 199
Score = 25.4 bits (53), Expect = 0.62
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
+ RLW+PDV++ N+A
Sbjct: 100 IPPHRLWKPDVLMYNSA 116
Score = 22.2 bits (45), Expect = 5.8
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +2
Query: 65 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 229
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 230 RIQADLQMNWIDKRLSWNAGXVG 298
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 31.5 bits (68), Expect = 0.009
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V+++GS ++ + M + +P D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.1 bits (67), Expect = 0.013
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A V +G V W + S+ ++ +P D+QTC K GS ++ ++D
Sbjct: 132 KATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVLKLGSWTYDGFKVD 182
Score = 27.5 bits (58), Expect = 0.15
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.017
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V+++GS ++ + + + +P D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.022
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V+++GS ++ + + + +P D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.022
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 379 GYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 555
G Y V+++GS ++ + + + +P D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 203 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 298
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
++ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 29.5 bits (63), Expect = 0.038
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + G V W + + + +P D QTC KFGS ++ ++D
Sbjct: 124 KAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQID 174
Score = 28.3 bits (60), Expect = 0.088
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 291 EWGCSTWL-VSSERLWRPDVVLLNAAATTAGV 383
E+G T L V SE +W PD+VL N A GV
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGV 119
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 29.1 bits (62), Expect = 0.050
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 418 SVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 558
++ ++ +L + +M +P+D Q C + S H +DEM F D
Sbjct: 150 TILYMVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWD 196
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 28.7 bits (61), Expect = 0.067
Identities = 9/42 (21%), Positives = 24/42 (57%)
Frame = +1
Query: 427 WIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
++ +L + +M+ +++P+D Q C+ S H + ++ F+
Sbjct: 122 YMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFI 163
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 28.7 bits (61), Expect = 0.067
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+S +GSV++ R + M L +P D Q CT + S
Sbjct: 142 RLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIES 181
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 297 GCSTWLVSSERLWRPDVVLLNAA 365
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
Score = 27.9 bits (59), Expect = 0.12
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 394 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
+A + + G V W + + ++ +P D QTC KFGS ++ +D
Sbjct: 124 KAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYTVD 174
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 27.5 bits (58), Expect = 0.15
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 403 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
+ +G V RL + ++L+ +P D+Q C F S HN +M
Sbjct: 124 IDPSGMVRLNTRLQATLNCGLRLEKFPFDVQECPLIFESWTHNVLDM 170
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.1 bits (57), Expect = 0.20
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 119 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.1 bits (57), Expect = 0.20
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 119 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 27.1 bits (57), Expect = 0.20
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 400 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 519
R+ ++GS++ RL I+ M L +P D Q C + S
Sbjct: 58 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 97
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 26.6 bits (56), Expect = 0.27
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 376 PGYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
P ++ALR + NG+V+++ R + +L+ +P D C+F S + + +V
Sbjct: 161 PVHFALR--IYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYV 217
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 26.6 bits (56), Expect = 0.27
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 376 PGYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
P ++ALR + NG+V+++ R + +L+ +P D C+F S + + +V
Sbjct: 161 PVHFALR--IYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYV 217
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 26.6 bits (56), Expect = 0.27
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 376 PGYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
P ++ALR + NG+V+++ R + +L+ +P D C+F S + + +V
Sbjct: 212 PVHFALR--IYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYV 268
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 26.6 bits (56), Expect = 0.27
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 376 PGYYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 552
P ++ALR + NG+V+++ R + +L+ +P D C+F S + + +V
Sbjct: 161 PVHFALR--IYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYV 217
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.27
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 403 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 546
VS+ G V W+ + + ++ +P D Q C K+ S ++ +++
Sbjct: 113 VSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWASWTYDGYQLE 160
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 315 VSSERLWRPDVVLLNAA 365
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,314
Number of Sequences: 438
Number of extensions: 4445
Number of successful extensions: 74
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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