Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B10
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.028
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 29 0.80
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 28 1.4
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 1.8
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.6
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 26 7.5
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.5
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 9.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.9 bits (74), Expect = 0.028
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +3
Query: 177 RPSASESLVTMPIEALPAGPAMETSMHPERVRVLAPVVENPRSEM---WGSNASSPARRD 347
+PS + V P A+P PA + + V AP V P S A+ P
Sbjct: 1096 KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155
Query: 348 QETPPVPSPALYVECGPSSGASTPTTERPAS 440
PPVP P++ P+ + P +PA+
Sbjct: 1156 SGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA 1186
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/88 (26%), Positives = 31/88 (35%)
Frame = +3
Query: 177 RPSASESLVTMPIEALPAGPAMETSMHPERVRVLAPVVENPRSEMWGSNASSPARRDQET 356
+PS + V P +P P + P AP V P S P
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP------SVGVPPVPPPSTA 1216
Query: 357 PPVPSPALYVECGPSSGASTPTTERPAS 440
PPVP+P+ + P A P P+S
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAPSS 1244
Score = 27.5 bits (58), Expect = 2.4
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +3
Query: 201 VTMPIEALPAGPAMETSMHPERVRVLAPVVENPRSEM----WGSNASSPARRDQETPPVP 368
V P A P PA + + V AP V P S + + P E PPVP
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Query: 369 SPALYVECGPSSGASTPTTERPASLSHV 452
P++ V P + P A L V
Sbjct: 1202 KPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229
Score = 27.1 bits (57), Expect = 3.2
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Frame = +3
Query: 180 PSASESLVTMPIEALPAGPAMETSMHPER---VRVLAPVVENPRSEMWGSNASS---PAR 341
PSA + +P A P T P+ P V P SE+ A S P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Query: 342 RDQETPPVPSPALYVECGPSSGASTPTTERPASLSHVSK 458
PPVP P++ P + P P+ V K
Sbjct: 1087 APSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPK 1125
Score = 26.6 bits (56), Expect = 4.3
Identities = 23/86 (26%), Positives = 30/86 (34%)
Frame = +3
Query: 201 VTMPIEALPAGPAMETSMHPERVRVLAPVVENPRSEMWGSNASSPARRDQETPPVPSPAL 380
V P A P P + + V AP V P S A + PPVP+P+
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP------SGAPPVPKPSVAAPPVPAPSS 1176
Query: 381 YVECGPSSGASTPTTERPASLSHVSK 458
+ P A P P+ V K
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPK 1202
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 29.1 bits (62), Expect = 0.80
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 297 PRSEMWGSNASSPARRDQETPPVPSPALYVEC-GPSSGASTPTTER 431
P+S + + + +P +PS ++ PSSGASTP +R
Sbjct: 50 PQSNALNTTPNESTSQIDSSPKIPSAVPHISTPNPSSGASTPNIKR 95
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 357 PPVPSPALYVECGPSSGASTPTTERPASLSHVSKEARRELIPXXXXXXXXLRDEEI 524
PP P + + ST TTE+ S HV +E + +P R+E I
Sbjct: 405 PPSPLMSNHESASTEHFNSTTTTEKELSSLHVGEERKNRSLPLSLIWNSKAREEYI 460
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 201 VTMPIEALPAGPAMETSMHPERVRVLAPVVE--NPRSEMWGSNASSPARRDQETPPVPSP 374
+T P+E P ET+ P ++ P+VE +E+ G + S R + +P
Sbjct: 198 MTTPMEETTTTPMEETTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTPMEAMITP 257
Query: 375 ALYVECGPSSGASTPTTE 428
+ P++ +TP E
Sbjct: 258 TVETTTLPTAAMTTPVEE 275
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 357 PPVPSPALYVECGPSSGASTPTTERPA 437
PP P A + G SS STP T PA
Sbjct: 60 PPPPKHASQLRAGGSSTGSTPRTASPA 86
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 228 AGPAMETSMHPERVRVLAPVVENPRSEMWGSNASSPARRDQETPPVPSPALYVECGPSSG 407
A P T+ P VR P+ +N + + S SS +PP SP+ +++
Sbjct: 132 ANPIHHTAPSPSDVRAF-PIHKNASTGVKRSFFSSSMSNGAMSPPSHSPSPFLQSSQHIP 190
Query: 408 ASTP 419
STP
Sbjct: 191 PSTP 194
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 339 RRDQETPPVPSPALYVECGPSSGASTPTTERPASLSHVSKEARREL 476
+ ++E V + L PSSGA+TPT P S + + R L
Sbjct: 65 KAEKEKLGVVNDELAESSKPSSGAATPTRSAPKSSAGLINSGLRAL 110
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 396 PSSGASTPTTERPASLSHVSKEARR 470
PS+GAS PT+ + H ++ AR+
Sbjct: 376 PSAGASIPTSSLKSFFEHAAEAARK 400
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 9.9
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 183 SASESLVTMPIEALPAGPAMETSMHPERVRVLAPVVENPRSEMWGSNASSPARRDQETPP 362
S S S+V P++ GPA + V +P V NP ++ GS+ + + P
Sbjct: 331 SNSSSIVQNPLQPARTGPAAINYNYTTNYSVSSPSVTNPFFDV-GSSTQNASLMGSTGYP 389
Query: 363 VPSPALYVE 389
+ +Y E
Sbjct: 390 SSANNVYYE 398
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +3
Query: 345 DQETPPVPSPALYVECGPSSGAST---PTTERPASLSHVS 455
+Q PP P P + GP S A T P PA + +S
Sbjct: 1878 NQAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAIS 1917
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,883
Number of Sequences: 5004
Number of extensions: 44251
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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