Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B07
(857 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 38 2e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 37 3e-04
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 36 4e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 36 6e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 36 6e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 35 8e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 35 0.001
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 33 0.003
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 33 0.003
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.018
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.29
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.3
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.5 bits (83), Expect = 2e-04
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 81 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 260
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 261 -GCSTWLVSSERLWRPDVV 314
G ++ +LW+PD++
Sbjct: 124 GGVKDLRITPNKLWKPDIL 142
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.5 bits (83), Expect = 2e-04
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +3
Query: 81 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 260
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 261 -GCSTWLVSSERLWRPDVV 314
G ++ +LW+PD++
Sbjct: 124 GGVKDLRITPNKLWKPDIL 142
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 314
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 314
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 314
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 314
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 314
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 168 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 314
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.7 bits (81), Expect = 3e-04
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 138 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 314
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 36.3 bits (80), Expect = 4e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 132 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 299
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 300 RPDVV 314
PD+V
Sbjct: 104 LPDIV 108
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 35.9 bits (79), Expect = 5e-04
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 210 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVV 314
++ +W D +L W+ E+G L V S+ +WRPD+V
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIV 112
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 99 RTIGSLPPXSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CST 272
R +G+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 273 WLVSSERLWRPDVV 314
V SE +W PD+V
Sbjct: 95 LHVPSEHIWLPDIV 108
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 35.5 bits (78), Expect = 6e-04
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 129 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 302
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 303 PDVV 314
PD+V
Sbjct: 113 PDIV 116
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 35.5 bits (78), Expect = 6e-04
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 129 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 302
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 303 PDVV 314
PD+V
Sbjct: 113 PDIV 116
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 35.1 bits (77), Expect = 8e-04
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 210 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVV 314
++ W D +L WN E+G L V SE +W PD+V
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIV 121
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 132 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 308
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 309 VV 314
+
Sbjct: 92 TI 93
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.5 bits (73), Expect = 0.003
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 129 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 302
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 303 PDVV 314
PD+V
Sbjct: 111 PDIV 114
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 33.1 bits (72), Expect = 0.003
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 96 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTW 275
+R +G+ + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 276 L-VSSERLWRPDVV 314
L + RLW+PDV+
Sbjct: 98 LRIPPHRLWKPDVL 111
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 30.7 bits (66), Expect = 0.018
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 171 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPD 308
I E + T + + +W+D+RL++ G+ + + R+W+PD
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 26.6 bits (56), Expect = 0.29
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 213 QMNWIDKRLSWNAGEWGCSTWLVSSERLWRPD 308
+ +W D RLS+ S + ER+WRPD
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPD 121
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 275 PSAAAPFPCVPTQS 234
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,170
Number of Sequences: 438
Number of extensions: 2541
Number of successful extensions: 37
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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