Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_B05
         (1102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.22 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.87 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   1.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   6.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   6.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   6.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.1  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   8.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 640 PPPPPPPXGXXKKXXXGXGXPPXXKKKKK 554
           PPPPPPP G           PP   KK+K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 30.7 bits (66), Expect = 0.38
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 641 PPPPPPXPGXXKKXXXWGXXPPXXKKKKK 555
           PPPPPP PG           PP   KK+K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 645 PPPPPPPXPXXXKKXXXXGXXPPPPXKKKK 556
           P  PPPP P    +       PPPP   KK
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.87
 Identities = 21/86 (24%), Positives = 22/86 (25%)
 Frame = -1

Query: 643 PPPPPPPPXGXXKKXXXGXGXPPXXKKKKKXXXXXXXXXXXXXXXXXXXKXVXXPPPPXX 464
           PPPPPPP      K   G G                                  PPPP  
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSS---NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 463 XXXXXXGRPPPLXXXXXXXXXGXPPP 386
                  +PPPL           PPP
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 363 PPPKKXXXGGGXPPPPP 413
           PPP     G G PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 642 PPPPPPXPXXXKKXXXXGXXPPPP 571
           PPPPPP P         G  PPPP
Sbjct: 761 PPPPPPPPG----VAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 363 PPPKKXXXGGGXPPPPP 413
           PPP      G  PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 639 PPPPPXPXXXKKXXXXGXXPPPP 571
           PPPPP P            PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 643  PPPPPPPPXGXXKK 602
            PPPPPPPP    KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 643 PPPPPPPP 620
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
 Frame = -2

Query: 645  PPPPP---PPXPXXXKKXXXXGXXPPPP 571
            PPPPP   PP P            PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 640 PPPPPPPXGXXKKXXXGXGXPPXXKKKK 557
           P PPPPP G   K        P  KK K
Sbjct: 81  PSPPPPPEGIKIKISTKGAGNPSAKKLK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,546
Number of Sequences: 5004
Number of extensions: 25366
Number of successful extensions: 351
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 581717144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)