Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_B03
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.14 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.8  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +2

Query: 488 PPXIXGGPXVFXPPXXXGGXGGKPPPPXXXPP 583
           P  I GGP    PP   G  G  PPPP   PP
Sbjct: 754 PAPIMGGPP--PPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +2

Query: 509 PXVFXPPXXXGGXGGKPPPPXXXPPXXPXXKXPPXGGXXXGG 634
           P    PP    G    PPPP       P    PP      GG
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -2

Query: 591 GXXGGFXXGGGGXPPXPPFXXGGXKTXGPPKXXGG 487
           G  GGF  G GG PP P    G     G     GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG 222


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 146 VDIQSXWAEITLRQHPRGPSQCFVLIRQSGFPLS 45
           VD  + +AE+ +  HP GPS  FV+  Q+G PLS
Sbjct: 34  VDPNTPYAELWMGSHPSGPS--FVM--QTGKPLS 63


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 557 PPPPXXXPPXXPXXKXPP 610
           PPPP   PP  P    PP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 551 GKPPPPXXXPPXXPXXKXPP 610
           G PPPP   P   P  + PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP 26


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 209 GYLKRVIVTPAVYPRLLEFLHVDIQSXW 126
           G+++R+ V    YP LLE+L++ + S +
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSSY 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,351
Number of Sequences: 5004
Number of extensions: 40680
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)