Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B01
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 175 6e-45
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 48 1e-06
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.44
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 28 1.8
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.4
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.4
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 7.2
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 7.2
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 9.5
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 9.5
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 9.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 175 bits (426), Expect = 6e-45
Identities = 80/138 (57%), Positives = 107/138 (77%)
Frame = +1
Query: 157 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPH 336
++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +++ P LE+LLP
Sbjct: 20 EKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPV 79
Query: 337 IKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPXKTSFFQAL 516
++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL
Sbjct: 80 VRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQAL 139
Query: 517 SIPTKISKGTIEIINDVH 570
IPTKI++GTIEI +DVH
Sbjct: 140 GIPTKITRGTIEITSDVH 157
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 48.4 bits (110), Expect = 1e-06
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Frame = +1
Query: 151 SCDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI-----KDHLDNNPA 315
S D + +I N+ + +++IR +GS I MGK +M KA+ ++H +N
Sbjct: 33 SLDSFDYMWIFDVTNMRNTYLKRIRDDWKGSRI-FMGKTKVMAKALGHTPEEEHAENVSK 91
Query: 316 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA 468
L KLL G VG +FT EV E+ VQ AR GA+AP + VIPA
Sbjct: 92 LTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 251 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 358
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -3
Query: 293 SLMALRIIVFFPMSTILEPRSEXXXXXXXCEPTLSAPTMKHFGYSSQELDDLNEVVRLPS 114
S+ A+ I FP L+P + P+L +M H ++ + + L S
Sbjct: 103 SVFAMAICTTFPHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDS 162
Query: 113 SLVL 102
SL+L
Sbjct: 163 SLIL 166
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 317 RAGLLSRWSLMALRIIVFFPMSTILEPR 234
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 395 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 270
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 410 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 249
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.4
Identities = 27/109 (24%), Positives = 44/109 (40%)
Frame = +2
Query: 158 TSTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHT 337
TST S+ P+T S SV PV+ S S T T+ + C T
Sbjct: 482 TSTPVTST--PLTTTNCTTSTSVPYTSTPVTSSNYTIS-----SSTPVTSTPVTTTNCTT 534
Query: 338 SRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPAS 484
S + L + +P ++ + TNC T + + P+ + +TP +
Sbjct: 535 STSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTPVT 582
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.2
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -3
Query: 488 GPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSFS 318
G PV + + G++ P AGAW L N L T + +NT P PL G FS
Sbjct: 139 GGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIFS 195
Query: 317 RAGL 306
L
Sbjct: 196 EEEL 199
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 557 MISIVPFEILVGIERAWKKEVXXGPRPVLWAGMTTDNGAMAP 432
+IS P + L+GI AW E R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 169 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 315
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 14 EFCPARKSCVLSCP*ISSKSLRH 82
E PA++ LSCP + SK + H
Sbjct: 489 EIVPAKERAYLSCPKVWSKIINH 511
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 564 IVDDFNSTL*NLGRDRKSL 508
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,696
Number of Sequences: 5004
Number of extensions: 54695
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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