Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_FL5_B01
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 169 2e-42
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 169 2e-42
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 169 2e-42
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 32 0.46
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.80
06_01_0080 + 644021-645463 31 1.4
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 5.7
03_04_0243 + 19298293-19299117 28 7.5
11_01_0355 + 2679561-2680985,2681183-2682295 28 9.9
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 9.9
02_03_0134 - 15596379-15597689 28 9.9
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 169 bits (412), Expect = 2e-42
Identities = 83/142 (58%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Frame = +1
Query: 157 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLL 330
DEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+
Sbjct: 23 DEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELM 82
Query: 331 PHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPXKTSFFQ 510
P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ
Sbjct: 83 PLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQ 142
Query: 511 ALSIPTKISKGTIEIINDVHXL 576
L+IPTKI+KGT+EII V +
Sbjct: 143 VLNIPTKINKGTVEIITPVELI 164
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 169 bits (411), Expect = 2e-42
Identities = 83/142 (58%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Frame = +1
Query: 157 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLL 330
DEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+
Sbjct: 23 DEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELM 82
Query: 331 PHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPXKTSFFQ 510
P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ
Sbjct: 83 PLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQ 142
Query: 511 ALSIPTKISKGTIEIINDVHXL 576
L+IPTKI+KGT+EII V +
Sbjct: 143 VLNIPTKINKGTVEIITPVELI 164
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 169 bits (411), Expect = 2e-42
Identities = 83/142 (58%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Frame = +1
Query: 157 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLL 330
DEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+
Sbjct: 23 DEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELM 82
Query: 331 PHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPXKTSFFQ 510
P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ
Sbjct: 83 PLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQ 142
Query: 511 ALSIPTKISKGTIEIINDVHXL 576
L+IPTKI+KGT+EII V +
Sbjct: 143 VLNIPTKINKGTVEIITPVELI 164
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 32.3 bits (70), Expect = 0.46
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Frame = +1
Query: 226 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 396
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 397 LLENKVQAPARPGAIAPLSV----VIPAHN--TGLGPXKTSFFQALSI 522
+L++ A P + LS I HN G P K S +L +
Sbjct: 432 ILDHNSFVGALPDHLGNLSARLISFIADHNKLAGSLPEKMSNLSSLEL 479
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.80
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 310 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 468
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>06_01_0080 + 644021-645463
Length = 480
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 564 IVDDFNSTL*NLGRDRKSLEERGLXWTEAGVVGGND 457
I+D N N R K++EERGL + GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 366 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 271
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 461 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 318
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 299 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 421
W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 438 GTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 310
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>02_03_0134 - 15596379-15597689
Length = 436
Score = 27.9 bits (59), Expect = 9.9
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 SSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLA 355
S W P ARNR S+ ++R A S + +K+ ++P + T +AT
Sbjct: 114 SVWPPALTARNRSSKDMNR-TAKSSSAMQKSNLSSRPGVDKMAASSAKQ---RTQKATPG 169
Query: 356 SCSPAET-SLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTP 478
+ + +T ++ SV T K V +P Q + P+ P
Sbjct: 170 ALAGGKTQAVPSVRAPGTTTKKTMGVANSVPSIQRTSIPSRP 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,087,260
Number of Sequences: 37544
Number of extensions: 419551
Number of successful extensions: 1143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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