Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_FL5_A18
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.22 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.22 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.22 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +2

Query: 407 FVPLLALLVSRRYLAVNLLTLPEHIHSTYQPRDRCSLSLFPPDALMGPGIPRHARQVSAL 586
           FVPL AL           L  P+   +     +RC+L L PP  ++  G  +    +  L
Sbjct: 592 FVPLTALSEEGVQSKDLALICPDGGRAEINEWERCNLGLEPPRVILSSG-AKSPTVLEEL 650

Query: 587 AHGEVVCAVTVS 622
            HG +  +   S
Sbjct: 651 THGTLAASTLYS 662


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +2

Query: 407 FVPLLALLVSRRYLAVNLLTLPEHIHSTYQPRDRCSLSLFPPDALMGPGIPRHARQVSAL 586
           FVPL AL           L  P+   +     +RC+L L PP  ++  G  +    +  L
Sbjct: 592 FVPLTALSEEGVQSKDLALICPDGGRAEINEWERCNLGLEPPRVILSSG-AKSPTVLEEL 650

Query: 587 AHGEVVCAVTVS 622
            HG +  +   S
Sbjct: 651 THGTLAASTLYS 662


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +2

Query: 407 FVPLLALLVSRRYLAVNLLTLPEHIHSTYQPRDRCSLSLFPPDALMGPGIPRHARQVSAL 586
           FVPL AL           L  P+   +     +RC+L L PP  ++  G  +    +  L
Sbjct: 592 FVPLTALSEEGVQSKDLALICPDGGRAEINEWERCNLGLEPPRVILSSG-AKSPTVLEEL 650

Query: 587 AHGEVVCAVTVS 622
            HG +  +   S
Sbjct: 651 THGTLAASTLYS 662


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 761 GQQFD*PYVVVPLQTIQLTDLGP 693
           G  +D  Y+V+P   + + D+GP
Sbjct: 150 GDDYDGKYLVLPSGELHIRDVGP 172


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 374 YPARTYASCAPFPR 333
           YP  TY++  PFP+
Sbjct: 296 YPTMTYSNGLPFPQ 309


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 374 YPARTYASCAPFPR 333
           YP  TY++  PFP+
Sbjct: 296 YPTMTYSNGLPFPQ 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,001
Number of Sequences: 438
Number of extensions: 5506
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)