Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_P22
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 98 1e-21
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 98 2e-21
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.9
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 4.3
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.7
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr... 26 7.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 10.0
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 98.3 bits (234), Expect = 1e-21
Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 2/100 (2%)
Frame = -3
Query: 540 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 361
PGVE LAPGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENII 284
Query: 360 ANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNK 247
+N D+TRL+ SDEI+ +++A RV RA +K NPL NK
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324
Score = 73.7 bits (173), Expect = 3e-14
Identities = 34/76 (44%), Positives = 50/76 (65%)
Frame = -1
Query: 794 GHIIEKIPELPXX*PTKSKRSTRPNRLSSS*GAFKAWSDILKVYKSQRLRAGKGKMRNRR 615
GH IE+IPE+P + + + KA+ D++KV S++LRAGKGK+RNRR
Sbjct: 141 GHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRR 200
Query: 614 RIQRKGPLIXFNKDSG 567
+QR+GPL+ FN+D+G
Sbjct: 201 HVQRRGPLVVFNEDAG 216
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 97.9 bits (233), Expect = 2e-21
Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 2/100 (2%)
Frame = -3
Query: 540 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 361
PGVE LAPGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENII 284
Query: 360 ANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNK 247
+N D+TRL+ SDEI+ +++A RV RA +K NPL NK
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324
Score = 74.1 bits (174), Expect = 2e-14
Identities = 34/76 (44%), Positives = 50/76 (65%)
Frame = -1
Query: 794 GHIIEKIPELPXX*PTKSKRSTRPNRLSSS*GAFKAWSDILKVYKSQRLRAGKGKMRNRR 615
GH IE+IPE+P + + + KA+ D++KV S++LRAGKGK+RNRR
Sbjct: 141 GHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRR 200
Query: 614 RIQRKGPLIXFNKDSG 567
+QR+GPL+ FN+D+G
Sbjct: 201 HVQRRGPLVVFNEDTG 216
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 476 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 342
+D+ S+ LS H+ T +S R H ST PSQ + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 470 VSSSGLSPHSAGLTPYSGHGRHHRNK 393
VS S HS P+S GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.2 bits (55), Expect = 5.7
Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 5/180 (2%)
Frame = -1
Query: 668 VYKSQRLRAGKGKMRNRRRIQRKGPLIXFNKDSGSDSRLPQHSPVWSS*MLTS*TS*SWL 489
+ + + A +GK +N + K P I + + + L + P S + S W+
Sbjct: 53 ILQQKHENAQQGKKQNNSKSFSKKPAIDVHSEDAFPTLLSKTGP--SKPRIVS-----WV 105
Query: 488 REVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLT-----SHVFSSLM 324
R+ + S +G S P+S R K S+ + T T + +
Sbjct: 106 RKTASNTSVAGSDSVSRDKIPFSASSRASSTKSTLSSVKETDFVTETLILSPDNQAPRMS 165
Query: 323 RSGRSSVLPTNA*SVLHAN*TRSPINKAMLKLNPYAAVLKRKAILELRRRKNLKALADAE 144
G+ + + +V+H TR ++ A N + + + ++ RR+ LK + E
Sbjct: 166 FVGKPNSVAEIVRTVMHQTSTRINVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRE 225
>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 169
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 750 DKVQEIXKTKQAVIFLRRLQG 688
DK+ +I KT Q+V FL+ QG
Sbjct: 55 DKIPDIRKTLQSVQFLKERQG 75
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -3
Query: 318 RKVLRAPNKRVIRA--TRKLNPLTNKQGDAETQSLRGRAEE 202
+K+ R++RA T+ + +K+GD +T++L+GRA +
Sbjct: 333 KKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTRTLQGRARK 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,985
Number of Sequences: 5004
Number of extensions: 51985
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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