Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_P22
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 108 6e-24
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 105 4e-23
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.1
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 30 2.0
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.6
02_04_0073 - 19471254-19472681 29 4.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 108 bits (259), Expect = 6e-24
Identities = 53/122 (43%), Positives = 76/122 (62%)
Frame = -3
Query: 540 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 361
PGV+ LAPGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKM
Sbjct: 230 PGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKM 289
Query: 360 ANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGDAETQSLRGRAEEESYLRAA 181
AN DL R++ SDE++ V++ NK V R ++ NPL N + G A + + L A
Sbjct: 290 ANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEA 349
Query: 180 QK 175
+
Sbjct: 350 AR 351
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/74 (39%), Positives = 40/74 (54%)
Frame = -1
Query: 794 GHIIEKIPELPXX*PTKSKRSTRPNRLSSS*GAFKAWSDILKVYKSQRLRAGKGKMRNRR 615
GH IE +PELP ++ + ++ A++D K S +R GKGKMRNRR
Sbjct: 145 GHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRR 204
Query: 614 RIQRKGPLIXFNKD 573
I RKGPLI + +
Sbjct: 205 YINRKGPLIVYGTE 218
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 105 bits (252), Expect = 4e-23
Identities = 53/122 (43%), Positives = 73/122 (59%)
Frame = -3
Query: 540 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 361
PGV+ LAPGGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKM
Sbjct: 229 PGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKM 288
Query: 360 ANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGDAETQSLRGRAEEESYLRAA 181
AN DL+RL+ SDE++ V++ NK V + NPL N + G A + + L A
Sbjct: 289 ANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEA 348
Query: 180 QK 175
+
Sbjct: 349 AR 350
Score = 52.0 bits (119), Expect = 6e-07
Identities = 29/74 (39%), Positives = 38/74 (51%)
Frame = -1
Query: 794 GHIIEKIPELPXX*PTKSKRSTRPNRLSSS*GAFKAWSDILKVYKSQRLRAGKGKMRNRR 615
GH IE +PE P + + + A++D K S +RAGKGKMRNRR
Sbjct: 144 GHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRR 203
Query: 614 RIQRKGPLIXFNKD 573
I RKGPLI + +
Sbjct: 204 YINRKGPLIVYGTE 217
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -1
Query: 506 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 333
+S S+LR + LD+SSS +P S+ H HH+ + S WP S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435
Query: 332 SLMRSGRSSVLPTNA 288
++ SG LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = -3
Query: 417 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGD 238
S ++PS + P P + L R + DE L+A ++ ++A ++ ++
Sbjct: 367 SHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQADQEKELKALQEAELRRLEETA 426
Query: 237 AETQSLRGRAEEESYLRAAQ--KEELEGS 157
A +L + +EE R Q +EELE S
Sbjct: 427 AREAALEKQKQEEEERRKKQLEEEELESS 455
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 492 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 352
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 452 SPHSAGLTPYSGHGRHHRNKR 390
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,508,207
Number of Sequences: 37544
Number of extensions: 393865
Number of successful extensions: 1057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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