Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_P22
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    88   6e-18
Z69661-4|CAA93491.1|  238|Caenorhabditis elegans Hypothetical pr...    34   0.14 
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    28   9.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
 Frame = -3

Query: 540 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPK 364
           PGV+           LAPGGHLGR +IWT+SAF +LD ++G+    S Q KK +++P P 
Sbjct: 224 PGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPI 283

Query: 363 MANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNK 247
           MAN+D +R+++S+E+ K +RAP K  +      NPL  +
Sbjct: 284 MANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKR 322



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 27/75 (36%), Positives = 44/75 (58%)
 Frame = -1

Query: 794 GHIIEKIPELPXX*PTKSKRSTRPNRLSSS*GAFKAWSDILKVYKSQRLRAGKGKMRNRR 615
           GH+I+++ E+P     K +   +             W+DI KVY S+R RAGKGK+RNR+
Sbjct: 140 GHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQ 199

Query: 614 RIQRKGPLIXFNKDS 570
             Q+ GP++ + +D+
Sbjct: 200 HKQKLGPVVIYGQDA 214


>Z69661-4|CAA93491.1|  238|Caenorhabditis elegans Hypothetical
           protein F48F7.6 protein.
          Length = 238

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 399 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRA--PNKRVIRATRKLNPLTNKQGDAETQ 226
           K+ KN  LPQ K  +  L   L+ + I  ++ A   NK++I +        NK+   E +
Sbjct: 36  KKTKNMTLPQKKAESAFLMICLQRNTIELMVTALLANKKIIDSKGNCAFCRNKKQHEEEK 95

Query: 225 SLRGRAEEESYLRAAQKEELE 163
              GR + + +L    K+EL+
Sbjct: 96  WCAGRTKLQLFLHRIDKDELK 116


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = -3

Query: 408 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGD 238
           TP +  +  + P P+     ++D  ++ +  + R+V      +V ++     P+  ++ +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226

Query: 237 AETQSLRGRAEEESYLRAAQKEELE 163
                 +G  EE+  +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/85 (18%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = -3

Query: 408 TPSKQKKNFNLPQPKMA---NTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGD 238
           TP +  +  + P P+     ++D  ++ +  + R+V      +V ++     P+  ++ +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226

Query: 237 AETQSLRGRAEEESYLRAAQKEELE 163
                 +G  EE+  +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -1

Query: 473 DVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV 303
           + ++S   P+S   TP S     G+ HR     S      +PT+     SS+M S  S  
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591

Query: 302 LPTNA*SVLHAN 267
           LP+ + S  + N
Sbjct: 592 LPSTSFSNQYPN 603


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical
           protein F10F2.2 protein.
          Length = 1343

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -3

Query: 336 LKSDEIRKVLRAPNKRVIRATRKLNPLTNKQGDAETQSLRGRAEEESYLRAAQKEELEGS 157
           +  DE+RK   AP+++V++    +  +    G A + S++G  E +    A Q+ + E  
Sbjct: 425 IDKDEVRKEPCAPHQKVVKIGGPVYRIGVGGGAASSVSVQGNRENQLDFAAVQRGDAEMG 484

Query: 156 G 154
           G
Sbjct: 485 G 485


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 233 KLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 75
           K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RRR
Sbjct: 360 KMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRR 411


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 474  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 295
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 294  KRVI 283
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 474  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 295
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 294  KRVI 283
            K  +
Sbjct: 2849 KEFV 2852


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 232 FSIALFIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWL 372
           + +A    E+ +  C T     GS +DL  L  L++   ++  H W+
Sbjct: 95  YKVAFLQEEKCRLVCDTKKYARGSADDLAKLRLLQRAMTLNYQHHWI 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,134
Number of Sequences: 27780
Number of extensions: 306810
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)