Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_P18
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    92   1e-19
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    92   1e-19
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   1.9  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   3.3  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.3  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.4  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.8  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -2

Query: 293 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 114
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 113 D 111
           D
Sbjct: 386 D 386



 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
 Frame = -3

Query: 709 REHXEKPIPVDSVFAPR*ND*LHWCX-PRAKDTK-VSLLVGTQRSYPVRHTKGLRKVACI 536
           REH EK + + S F    N+ +      R K  +  +   GT+R  P +  +GLRKVACI
Sbjct: 196 REHFEKTVDIKSTFEQ--NEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACI 252

Query: 535 GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 416
           GAWHP+ V +TVARAG  GY HRT++N KIYRIG  +  K
Sbjct: 253 GAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 56/182 (30%), Positives = 83/182 (45%)
 Frame = -1

Query: 825 LRVIAHXXXXXXXXXXXKAHIMEIXXXRGTIXXQSEMGQENXWRNLSLSILCLPQDEMID 646
           +RV+AH           KAH+MEI    G++  + E  +E+  + + +      Q+EMID
Sbjct: 158 VRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMID 216

Query: 645 CIGVXQGQRIQRCHFSLAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITV 466
            IGV +G+  +        K   P  T R L K+  +        +     + R      
Sbjct: 217 VIGVTRGKGNEGTTARWGTKRL-PRKTHRGLRKVACIGAWHPANVQ---WTVARAGNAGY 272

Query: 465 LK*TRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLL 286
           +  T+    L+  I++        NAST++D +EK ITPMGGF  YG V NDFVM  G  
Sbjct: 273 MHRTQ----LNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGAT 328

Query: 285 HG 280
            G
Sbjct: 329 PG 330


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/61 (67%), Positives = 49/61 (80%)
 Frame = -2

Query: 293 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 114
           G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 113 D 111
           D
Sbjct: 386 D 386



 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
 Frame = -3

Query: 709 REHXEKPIPVDSVFAPR*ND*LHWCX-PRAKDTK-VSLLVGTQRSYPVRHTKGLRKVACI 536
           REH EK + + S F    N+ +      R K  +  +   GT+R  P +  +GLRKVACI
Sbjct: 196 REHFEKTVDIKSTFEQ--NEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACI 252

Query: 535 GAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 416
           GAWHP+ V +TVARAG  GY HRT++N KIYRIG  +  K
Sbjct: 253 GAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 56/182 (30%), Positives = 83/182 (45%)
 Frame = -1

Query: 825 LRVIAHXXXXXXXXXXXKAHIMEIXXXRGTIXXQSEMGQENXWRNLSLSILCLPQDEMID 646
           +RV+AH           KAH+MEI    G++  + E  +E+  + + +      Q+EMID
Sbjct: 158 VRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMID 216

Query: 645 CIGVXQGQRIQRCHFSLAHKEATP*DTPRVLGKLPALELGILLGCRSL*LVLVRKVIITV 466
            IGV +G+  +        K   P  T R L K+  +        +     + R      
Sbjct: 217 VIGVTRGKGNEGTTARWGTKRL-PRKTHRGLRKVACIGAWHPANVQ---WTVARAGNAGY 272

Query: 465 LK*TRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLL 286
           +  T+    L+  I++        NAST++D +EK ITPMGGF  YG V NDFVM  G  
Sbjct: 273 MHRTQ----LNSKIYRIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGAT 328

Query: 285 HG 280
            G
Sbjct: 329 PG 330


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -3

Query: 175 SVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRENKHLTMQKKK 8
           SV+ +SR+R   +HS   +RR+   ++  L   Q+   AA    RE +HLT+ +KK
Sbjct: 2   SVVNESRKRRRLIHSEKETRRLDLGEEDDLELFQKE--AAWRRSREYEHLTVLEKK 55


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 497 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 351
           S +   L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 199 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 86
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 132 HGYTQEGSYSRRSCGYHNPS 73
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 473 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 333
           SP+    + L+Y   E  +   K +     +  + LRNPL R++VSP
Sbjct: 63  SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 380 SVDALFLITLPSFLWIPW 433
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,569
Number of Sequences: 5004
Number of extensions: 73672
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)