Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_P16
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   117   1e-26
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   117   1e-26
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.4  
06_03_0543 + 21967787-21970261                                         29   5.9  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.8  
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223...    28   7.8  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  117 bits (281), Expect = 1e-26
 Identities = 50/82 (60%), Positives = 62/82 (75%)
 Frame = -3

Query: 622 DPAQDHQPIXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 443
           DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQM 189

Query: 442 RGVLPRDQRWDVVVDLFFYRDP 377
           RG +    +WDV+VDLFFYRDP
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDP 211



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 24/52 (46%), Positives = 27/52 (51%)
 Frame = -1

Query: 825 IXLGGXXFVXIGNPXXXFVILXRPFGQXXXXKFAAHTGXTPIAGRFTPGXFT 670
           + L     V I NP    V   RP+GQ    KFA +TG   IAGR TPG FT
Sbjct: 62  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT 113


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  117 bits (281), Expect = 1e-26
 Identities = 50/82 (60%), Positives = 63/82 (76%)
 Frame = -3

Query: 622 DPAQDHQPIXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 443
           DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++
Sbjct: 130 DPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQM 189

Query: 442 RGVLPRDQRWDVVVDLFFYRDP 377
           RG +    +WDV+VDLFFYRDP
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDP 211



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 24/52 (46%), Positives = 27/52 (51%)
 Frame = -1

Query: 825 IXLGGXXFVXIGNPXXXFVILXRPFGQXXXXKFAAHTGXTPIAGRFTPGXFT 670
           + L     V I NP    V   RP+GQ    KFA +TG   IAGR TPG FT
Sbjct: 62  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT 113


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 229 TRCSSCFWSTPCSRRMVCPGTR*VEHN 149
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 481 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 392
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 229 TRCSSCFWSTPCSRRMVCPGTR*VEHN 149
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>07_01_0317 +
           2229894-2230137,2231142-2231233,2231327-2231364,
           2231695-2231717,2232026-2232132,2232208-2232370,
           2232581-2232663,2232775-2232837,2233049-2233072,
           2233119-2233304
          Length = 340

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 405 WLICSSTVTPEESEKDEQQARE 340
           WLIC   V P    K+ +QARE
Sbjct: 284 WLICQGNVVPIPGAKNAEQARE 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,662,286
Number of Sequences: 37544
Number of extensions: 346486
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)