Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_P13
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 209 3e-55
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 209 3e-55
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.98
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.9
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 27 3.9
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 5.2
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 26 6.9
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 209 bits (511), Expect = 3e-55
Identities = 102/161 (63%), Positives = 121/161 (75%)
Frame = -3
Query: 594 GTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 415
GT+R P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289
Query: 414 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 235
D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345
Query: 234 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 112
T R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -1
Query: 752 IQLXXGTIEDKVKWAREHXEKPIPVDSVFAQDEMIDCIGVTKGQ 621
IQ+ G++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -2
Query: 628 RGKGYKGVTSRWHTKKLPRKTXQG 557
RGKG +G T+RW TK+LPRKT +G
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 209 bits (511), Expect = 3e-55
Identities = 102/161 (63%), Positives = 121/161 (75%)
Frame = -3
Query: 594 GTQRSYPVRHXKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 415
GT+R P + +GLRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289
Query: 414 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 235
D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345
Query: 234 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 112
T R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -1
Query: 752 IQLXXGTIEDKVKWAREHXEKPIPVDSVFAQDEMIDCIGVTKGQ 621
IQ+ G++ DKV+WAREH EK + + S F Q+EMID IGVT+G+
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = -2
Query: 628 RGKGYKGVTSRWHTKKLPRKTXQG 557
RGKG +G T+RW TK+LPRKT +G
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRG 245
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.7 bits (61), Expect = 0.98
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 403 NFAVLFVDSLSNTIDFLVHFSTVMITFLTSTSY 501
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 133 HGYTQEGSYSRRSCGYHNPS 74
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 709 PENXWRNLSLSILCLPKMK*LTALVSPRGKGYKGVTSRWHTKKLPRKT 566
PE W+ +SLS L LPK + Y SR H KLP++T
Sbjct: 631 PECRWQKVSLSELVLPKKVKI---------AYMKAVSRVHPDKLPQQT 669
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 413 TAKLLKTMHLLSMICLRNPLHRWEVSPI 330
T K L H+L CLRN L R + PI
Sbjct: 322 TPKRLPCGHILHFHCLRNWLERQQTCPI 349
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 594 QREVTPLYPLPLGDTNAVNHFILGKHRIDRDRFLXMFSGPFHFV 725
Q ++ L P G T +V + G+ +D ++ +S FH V
Sbjct: 62 QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV 105
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 415 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 540
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,680
Number of Sequences: 5004
Number of extensions: 67749
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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