Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_P12
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   114   2e-26
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   113   3e-26
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    29   0.81 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    28   1.4  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  114 bits (274), Expect = 2e-26
 Identities = 69/170 (40%), Positives = 93/170 (54%), Gaps = 2/170 (1%)
 Frame = -1

Query: 781 QRFXXGKGKMXXXXXXXVRGPS*FXNKIRV*XAPSATXPGVEXXXXXXXXXXXLAPGGHX 602
           ++   GKGK+        RGP    N+           PGVE           LAPGGH 
Sbjct: 187 RKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHL 246

Query: 601 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 422
           GRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A  
Sbjct: 247 GRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAG 306

Query: 421 -KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 278
             RV RA  +K NPL N   + +LNPYA     KA ++L   K  KA  +
Sbjct: 307 PSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  113 bits (272), Expect = 3e-26
 Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 2/170 (1%)
 Frame = -1

Query: 781 QRFXXGKGKMXXXXXXXVRGPS*FXNKIRV*XAPSATXPGVEXXXXXXXXXXXLAPGGHX 602
           ++   GKGK+        RGP    N+           PGVE           LAPGGH 
Sbjct: 187 RKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHL 246

Query: 601 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 422
           GRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A  
Sbjct: 247 GRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAG 306

Query: 421 -KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 278
             RV RA  +K NPL N   + +LNPYA     KA +++   K  KA  +
Sbjct: 307 PSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = -2

Query: 603 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLP 424
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH       S R     
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASHFRYRSDPSTRHVSNS 357

Query: 423 TNA*SVLHAN*TRSPITRP 367
           TN  S LH + T   +  P
Sbjct: 358 TNK-SSLHPSPTSLRVAHP 375


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 27/109 (24%), Positives = 46/109 (42%)
 Frame = -1

Query: 526  KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 347
            KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P 
Sbjct: 730  KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787

Query: 346  AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 200
              +  ++   +      +  L   ++    L+KRN   K +      RK
Sbjct: 788  PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -1

Query: 460 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 287
           +S  +  +    +K+ IR  R+L+P    ++  + N Y+ + +  ++   R R       
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717

Query: 286 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 197
           L ++E  G +    +PA +  + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 597 VSSSGLSPHSAGLTPYSGHGRHHRNK 520
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,579
Number of Sequences: 5004
Number of extensions: 41244
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)